Detailed information NTG0293301

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: DK842_RS10335
• Genome accession: NZ_CP029495
• Coordinates: 2187946..2189079 (-)
• Length: 377 a.a.
• NCBI ID: WP_114061402.1
• Uniprot ID: -
• Organism: Chromobacterium phragmitis strain IIBBL 112-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2182946..2194079

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DK842_RS10315 (DK842_10315)	-	2183475..2185259 (+)	1785	WP_114061398.1	PglL family O-oligosaccharyltransferase	-
DK842_RS10320 (DK842_10320)	rpoH	2185339..2186202 (-)	864	WP_114061399.1	RNA polymerase sigma factor RpoH	-
DK842_RS10325 (DK842_10325)	ftsX	2186332..2187240 (-)	909	WP_114061400.1	permease-like cell division protein FtsX	-
DK842_RS10330 (DK842_10330)	ftsE	2187237..2187890 (-)	654	WP_114061401.1	cell division ATP-binding protein FtsE	-
DK842_RS10335 (DK842_10335)	pilA	2187946..2189079 (-)	1134	WP_114061402.1	signal recognition particle-docking protein FtsY	Machinery gene
DK842_RS10340 (DK842_10340)	rsmD	2189306..2189860 (+)	555	WP_114061403.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
DK842_RS10345 (DK842_10345)	-	2189970..2190221 (+)	252	WP_114061404.1	YfhL family 4Fe-4S dicluster ferredoxin	-
DK842_RS10365 (DK842_10365)	tuf	2190712..2191902 (+)	1191	WP_114061405.1	elongation factor Tu	-
DK842_RS10375 (DK842_10375)	secE	2192051..2192407 (+)	357	WP_114061406.1	preprotein translocase subunit SecE	-
DK842_RS10380 (DK842_10380)	nusG	2192407..2192940 (+)	534	WP_011137745.1	transcription termination/antitermination protein NusG	-
DK842_RS10385 (DK842_10385)	rplK	2193041..2193472 (+)	432	WP_021479134.1	50S ribosomal protein L11	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 39897.23 Da
• Isoelectric Point: 5.8177

>NTDB_id=293301 DK842_RS10335 WP_114061402.1 2187946..2189079(-) (pilA) [Chromobacterium phragmitis strain IIBBL 112-1]
MFSFFKKKPKPAETPLIETPVADALEPTPPVAPAPQAAVLAAIPAHDAEPAPIAPPVPAQPLPAPTAPAEPAPLKKMSWT
ERLKAGLAKTRDKLGKSLAGVFGGGKIDEDLYEELETVLLTADMGMDATVHLLGDVRERVSLKGLKDASELKGALKDSLQ
DLIGPLEVPLNVEGKKPFVIMMTGVNGAGKTTSIGKLAKYYQSQGKSVLLAAGDTFRAAAREQLIAWGERNNVTVIAQQG
GDSAAVCYDAIQAAVARGIDIVLADTAGRLPTQLHLMEEIKKVKRVIQKALPDAPHEVVLVLDANIGQNTVNQVKAFDDA
LGLTGLILTKLDGTAKGGVIAAIAKQRPIPLRFVGVGESIDDLRPFDSRDYIDALFE

Nucleotide

• Length: 1134 bp

>NTDB_id=293301 DK842_RS10335 WP_114061402.1 2187946..2189079(-) (pilA) [Chromobacterium phragmitis strain IIBBL 112-1]
ATGTTTAGCTTCTTCAAGAAAAAACCCAAACCGGCGGAAACGCCGCTGATCGAAACGCCGGTGGCTGACGCGCTGGAACC
GACACCCCCCGTCGCGCCGGCGCCGCAGGCAGCCGTACTCGCGGCGATCCCCGCCCATGATGCCGAACCCGCGCCCATCG
CCCCCCCTGTGCCCGCCCAGCCTCTGCCGGCTCCTACCGCGCCGGCCGAGCCCGCCCCGCTGAAGAAAATGAGCTGGACC
GAACGGCTGAAGGCGGGTCTGGCCAAAACCCGCGACAAGCTCGGCAAGTCGTTGGCCGGCGTATTCGGCGGCGGCAAGAT
AGACGAAGACCTGTATGAAGAACTGGAAACGGTGCTGCTGACCGCGGACATGGGCATGGATGCCACCGTCCATCTGCTGG
GCGATGTGCGAGAGCGGGTGTCGCTGAAGGGACTGAAAGACGCGTCGGAACTGAAGGGCGCGCTGAAGGATTCGCTGCAG
GACCTGATCGGCCCGCTGGAAGTGCCGCTGAACGTGGAAGGCAAGAAGCCATTCGTAATCATGATGACCGGCGTCAACGG
CGCCGGCAAGACCACCTCCATCGGCAAGCTGGCCAAGTACTACCAAAGCCAGGGCAAGAGCGTGCTGCTGGCGGCCGGCG
ACACCTTCCGCGCCGCCGCGCGCGAGCAGTTGATCGCCTGGGGCGAGCGCAACAACGTCACCGTGATCGCGCAGCAAGGC
GGCGACTCCGCCGCCGTGTGCTATGACGCGATCCAGGCCGCCGTCGCCCGCGGCATCGACATCGTGCTGGCCGACACCGC
CGGCCGCCTGCCGACGCAGCTGCACTTGATGGAGGAAATCAAAAAGGTGAAGCGCGTGATCCAGAAGGCGTTGCCCGATG
CGCCGCACGAGGTGGTGCTGGTGCTAGACGCCAATATCGGCCAGAACACCGTCAACCAGGTCAAGGCCTTCGACGACGCG
CTGGGTCTCACCGGCTTGATCCTGACCAAACTGGACGGCACCGCCAAGGGCGGCGTCATCGCCGCCATCGCCAAGCAGCG
GCCGATTCCGCTGCGCTTTGTCGGCGTAGGCGAGAGCATAGACGACCTGCGCCCCTTCGACAGCCGCGACTACATCGACG
CCCTGTTCGAATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (177-376)

• SRP54-type protein, helical bundle domain (SRP54_N) (93-159)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	61.005	100	0.676