Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   DK842_RS01530 Genome accession   NZ_CP029495
Coordinates   307344..308747 (+) Length   467 a.a.
NCBI ID   WP_114063561.1    Uniprot ID   A0A344UNR7
Organism   Chromobacterium phragmitis strain IIBBL 112-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 302344..313747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK842_RS01505 (DK842_01505) - 303947..304924 (+) 978 WP_114059776.1 SIS domain-containing protein -
  DK842_RS01510 (DK842_01510) - 304978..305502 (+) 525 WP_114059777.1 HAD family hydrolase -
  DK842_RS01515 (DK842_01515) lptC 305499..306068 (+) 570 WP_114059778.1 LPS export ABC transporter periplasmic protein LptC -
  DK842_RS01520 (DK842_01520) lptA 306058..306615 (+) 558 WP_114059779.1 lipopolysaccharide transport periplasmic protein LptA -
  DK842_RS01525 (DK842_01525) lptB 306612..307340 (+) 729 WP_114059780.1 LPS export ABC transporter ATP-binding protein -
  DK842_RS01530 (DK842_01530) rpoN/rpoN1 307344..308747 (+) 1404 WP_114063561.1 RNA polymerase factor sigma-54 Machinery gene
  DK842_RS01535 (DK842_01535) hpf 308821..309153 (+) 333 WP_114059781.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  DK842_RS01540 (DK842_01540) ptsN 309276..309737 (+) 462 WP_114059782.1 PTS IIA-like nitrogen regulatory protein PtsN -
  DK842_RS01545 (DK842_01545) hprK 309730..310686 (+) 957 WP_011136882.1 HPr(Ser) kinase/phosphatase -
  DK842_RS01550 (DK842_01550) rapZ 310667..311509 (+) 843 WP_114063562.1 RNase adapter RapZ -
  DK842_RS01555 (DK842_01555) - 311554..312162 (+) 609 WP_114059783.1 flavin prenyltransferase UbiX -
  DK842_RS01560 (DK842_01560) - 312164..313624 (+) 1461 WP_114059784.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 51666.86 Da        Isoelectric Point: 5.0477

>NTDB_id=293285 DK842_RS01530 WP_114063561.1 307344..308747(+) (rpoN/rpoN1) [Chromobacterium phragmitis strain IIBBL 112-1]
MKQSLQLKVSQQLTLTPQLQQSIKLLQLSTLDLQAEVERFLLDNPLLERGDDPRDGEAATNGAEQKDGAAESAEGDSRDD
SAGELLDWGAGGRKSDDDDFDPMLNVPCPVSLREHLLTQLGEIVLSDRDRAVMRLLIEELDEDGYLPQDLDELAGNLPLE
LELDSDELAVGLALLQQFDPAGVGARSLAESLELQLRRLPGGKPGHPLALAIVREHLPLLGGRDYAKLKKLLRCDDAALR
EAQALIARLNPHPATGFSHGDVHYVIPDISVRKLRGRWAAELNRAAMPRLRVNRLYERMLADSRGQGGEMSGRLQEARWL
VKNIQQRFDTILKVAEAIVERQQLFFERGEVAMRPLILRDIAEELGLHESTVSRSTSQKYLLCSRGLFELKYFFGSSLET
ESGGECSATAIKAHIRGMIDAEDRAKPLSDSAIADALAKQGIQVARRTVAKYREAMQIPAVSLRKAL

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=293285 DK842_RS01530 WP_114063561.1 307344..308747(+) (rpoN/rpoN1) [Chromobacterium phragmitis strain IIBBL 112-1]
ATGAAACAGTCACTTCAGCTCAAGGTTTCCCAACAGCTGACGCTGACGCCGCAGTTGCAGCAATCCATTAAGCTGCTGCA
GCTGTCCACGCTGGACCTGCAGGCGGAAGTGGAGCGTTTCCTGCTGGATAATCCCTTGCTGGAGCGCGGCGACGATCCGC
GCGACGGCGAAGCCGCGACGAATGGAGCGGAGCAGAAAGACGGCGCGGCCGAATCGGCCGAAGGCGACAGCCGCGACGAC
AGCGCCGGCGAATTGCTGGACTGGGGCGCGGGCGGACGCAAAAGCGACGACGACGATTTCGACCCCATGCTCAACGTGCC
CTGCCCGGTCAGCCTGCGAGAGCACCTGCTGACGCAGTTGGGCGAAATCGTCCTCTCCGACCGCGACCGCGCGGTGATGC
GCCTCTTGATCGAAGAGCTGGACGAGGACGGCTATCTGCCGCAGGACTTGGACGAACTGGCCGGCAACCTGCCGCTGGAG
CTGGAGCTGGACAGCGACGAACTGGCCGTCGGCCTCGCGTTGCTGCAGCAGTTCGATCCCGCCGGCGTCGGCGCCCGCTC
GCTGGCTGAATCGCTGGAACTGCAGTTGCGGCGCCTGCCCGGCGGCAAACCCGGCCACCCGCTGGCGCTGGCCATCGTCC
GCGAGCATCTGCCGCTGCTGGGCGGCCGCGATTACGCCAAGCTGAAAAAACTGCTGCGCTGCGACGACGCCGCGCTGCGC
GAGGCGCAGGCGTTGATCGCCCGCCTCAACCCGCATCCGGCCACCGGCTTCAGCCACGGCGACGTCCATTACGTGATTCC
CGACATCAGCGTGCGCAAGCTCCGTGGCCGCTGGGCCGCGGAGCTCAATCGCGCCGCCATGCCTCGCCTTCGCGTCAACC
GCCTGTACGAGCGCATGCTGGCAGACAGCCGCGGCCAGGGCGGCGAAATGTCCGGCCGGCTGCAGGAGGCGCGCTGGCTG
GTCAAGAACATCCAGCAGCGGTTTGACACCATACTCAAAGTGGCGGAAGCTATTGTCGAGCGTCAACAGTTGTTCTTCGA
GCGCGGAGAGGTGGCGATGCGGCCGCTGATCCTGCGCGACATCGCGGAAGAGCTGGGACTGCACGAATCCACCGTTTCCC
GCTCCACCAGCCAGAAATACCTGCTCTGTTCACGAGGTTTGTTCGAGCTCAAGTATTTCTTCGGCAGTTCGCTGGAAACT
GAAAGCGGCGGAGAGTGCTCCGCCACCGCGATCAAGGCCCACATCCGCGGCATGATAGACGCCGAGGACCGCGCCAAGCC
GCTGTCCGACAGCGCCATCGCCGACGCGCTGGCCAAGCAGGGAATACAGGTTGCCAGACGCACCGTAGCCAAGTATCGTG
AAGCCATGCAGATTCCGGCGGTGAGTCTGCGCAAGGCGCTATAA

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(110-296)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(312-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.096

100

0.559

Multiple sequence alignment