Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DKM44_RS09485 Genome accession   NZ_CP029494
Coordinates   1907303..1907923 (-) Length   206 a.a.
NCBI ID   WP_109827160.1    Uniprot ID   A0A2Z3JEG5
Organism   Deinococcus irradiatisoli strain 17bor-2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1902303..1912923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKM44_RS09460 (DKM44_09460) - 1904170..1905258 (+) 1089 WP_146202772.1 Ig domain-containing protein -
  DKM44_RS09465 (DKM44_09465) - 1905255..1906013 (+) 759 WP_109827156.1 hypothetical protein -
  DKM44_RS09470 (DKM44_09470) - 1906010..1906555 (+) 546 WP_109827157.1 hypothetical protein -
  DKM44_RS09475 (DKM44_09475) - 1906631..1906810 (+) 180 WP_342766823.1 RNA-binding S4 domain-containing protein -
  DKM44_RS09480 (DKM44_09480) - 1906807..1907313 (+) 507 WP_245895882.1 DUF1684 domain-containing protein -
  DKM44_RS09485 (DKM44_09485) comF 1907303..1907923 (-) 621 WP_109827160.1 ComF family protein Machinery gene
  DKM44_RS09490 (DKM44_09490) - 1907923..1908459 (-) 537 WP_245895883.1 hypothetical protein -
  DKM44_RS09495 (DKM44_09495) - 1908549..1909973 (+) 1425 WP_109827161.1 PLP-dependent aminotransferase family protein -
  DKM44_RS09500 (DKM44_09500) - 1910053..1911174 (+) 1122 WP_109827162.1 BMP family ABC transporter substrate-binding protein -
  DKM44_RS09505 (DKM44_09505) - 1911167..1911475 (-) 309 WP_109827163.1 hypothetical protein -
  DKM44_RS09510 (DKM44_09510) - 1911521..1912465 (+) 945 WP_109827164.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22555.03 Da        Isoelectric Point: 10.3732

>NTDB_id=293280 DKM44_RS09485 WP_109827160.1 1907303..1907923(-) (comF) [Deinococcus irradiatisoli strain 17bor-2]
MSVLRALLPRPCPGCGEGLGREAGLCQSCRAQLSPRAERHSLLSAEVTPHLVVLGRHHGALRRAARELKYTGHRDLAQVL
GAALARGVPGEWQLRAVSAVPMHPARQRQRHFNHAEVLARCLAAELGLPYLDSLRRTRQVAQQARLSGEERRRNLEGVFE
ARGGEALPQPLLLVDDVLTTSATLMACRDALQASGVTQLYYAVLTR

Nucleotide


Download         Length: 621 bp        

>NTDB_id=293280 DKM44_RS09485 WP_109827160.1 1907303..1907923(-) (comF) [Deinococcus irradiatisoli strain 17bor-2]
ATGAGCGTTCTGCGCGCCCTGCTGCCCCGGCCGTGTCCCGGCTGCGGCGAGGGACTGGGGCGGGAAGCAGGGCTGTGCCA
GTCGTGCCGCGCCCAGCTGAGCCCCCGCGCCGAGCGTCATTCGCTGCTGAGCGCCGAGGTCACGCCGCACCTGGTGGTGC
TGGGCCGCCATCACGGCGCGCTGCGCCGGGCTGCCCGCGAACTCAAGTACACCGGCCACCGCGACCTGGCGCAGGTGCTG
GGCGCGGCCCTGGCGCGGGGCGTGCCCGGCGAGTGGCAGCTGCGGGCGGTGAGCGCGGTGCCGATGCACCCGGCCCGGCA
GCGTCAGCGCCACTTCAACCACGCCGAGGTGCTGGCCCGCTGTCTGGCCGCCGAACTCGGTCTGCCGTATCTCGACAGCC
TGCGCCGTACCCGCCAGGTCGCTCAGCAGGCCCGGCTCAGCGGCGAGGAGAGGCGGCGCAATTTGGAGGGGGTCTTTGAG
GCGCGGGGCGGTGAAGCGCTACCTCAGCCGCTGCTGCTCGTGGACGACGTGCTGACCACGTCTGCCACGCTGATGGCCTG
CCGCGACGCTCTGCAAGCCAGCGGCGTGACGCAGCTGTACTACGCCGTGCTCACCCGCTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(3-38)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z3JEG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.68

100

0.607

Multiple sequence alignment