Detailed information NTG0293271

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DKM44_RS02030
• Genome accession: NZ_CP029494
• Coordinates: 390464..391636 (+)
• Length: 390 a.a.
• NCBI ID: WP_245896000.1
• Uniprot ID: -
• Organism: Deinococcus irradiatisoli strain 17bor-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 385464..396636

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DKM44_RS02005 (DKM44_02005)	-	385843..386652 (-)	810	WP_109824980.1	sugar phosphate isomerase/epimerase	-
DKM44_RS02010 (DKM44_02010)	era	386821..387741 (+)	921	WP_109824982.1	GTPase Era	-
DKM44_RS02015 (DKM44_02015)	-	387745..388404 (-)	660	WP_181392020.1	PIG-L deacetylase family protein	-
DKM44_RS02020 (DKM44_02020)	-	388475..389455 (+)	981	WP_109828140.1	GNAT family N-acetyltransferase	-
DKM44_RS02025 (DKM44_02025)	-	389452..390438 (+)	987	WP_109824986.1	GNAT family N-acetyltransferase	-
DKM44_RS02030 (DKM44_02030)	pilD	390464..391636 (+)	1173	WP_245896000.1	A24 family peptidase	Machinery gene
DKM44_RS02035 (DKM44_02035)	-	391640..393169 (-)	1530	WP_181392021.1	serine hydrolase	-
DKM44_RS02040 (DKM44_02040)	-	393260..394246 (-)	987	WP_109824990.1	malate dehydrogenase	-
DKM44_RS02045 (DKM44_02045)	rplS	394428..394886 (-)	459	WP_109824992.1	50S ribosomal protein L19	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 40147.36 Da
• Isoelectric Point: 6.4646

>NTDB_id=293271 DKM44_RS02030 WP_245896000.1 390464..391636(+) (pilD) [Deinococcus irradiatisoli strain 17bor-2]
MNVDVFGVIVMGVLGLLIGSFSNVLIWRLPRGENVAFPPSHCPNCDHPLSPLDLVPVVSWAALGGKCRYCRAPISPRYPI
IELISGLAYAGLATIFPLSAVGASLFGLGLLFTLLLVASVIDAETYTIPDELTLPGTVLGLIFGVVNNTSGAAAAGLPVF
AEALRGALMGAGVLVTISLLGSWVLRRFRERLYPELPLGYQQIALGLFGGVLLGGFSGNWWAAAAGGLALGIVSTLLNAA
ARRVVRLPELLTLGGALVALALLSGRGPSALLGGVQGGLAAAGAVSLLAGVYWWLSRTNEDAEDDSPSDPTAMGFGDVKL
AAVIGALLGFDKLLVAVAVAVVAGAVLGIVQRLVIGENRLKFGPYLAIGAVVALLWGESIMAAYRGYLGL

Nucleotide

• Length: 1173 bp

>NTDB_id=293271 DKM44_RS02030 WP_245896000.1 390464..391636(+) (pilD) [Deinococcus irradiatisoli strain 17bor-2]
GTGAATGTGGACGTGTTCGGGGTCATCGTCATGGGCGTGCTGGGTCTGCTCATCGGGTCGTTTTCCAATGTGCTGATCTG
GCGCCTGCCCAGAGGCGAGAACGTGGCGTTTCCGCCGAGCCACTGCCCCAACTGCGACCACCCGCTTTCGCCGCTGGACC
TGGTGCCGGTGGTGTCGTGGGCGGCGCTGGGGGGCAAATGTCGCTACTGCCGCGCGCCGATCAGCCCGCGTTACCCCATC
ATCGAACTGATCAGCGGGCTGGCCTACGCCGGGCTGGCGACCATCTTTCCGCTCAGCGCGGTGGGGGCGAGCCTTTTCGG
CCTGGGCCTGCTCTTTACCCTGCTGCTGGTCGCGTCGGTCATCGACGCCGAGACCTACACCATTCCCGACGAGCTGACCT
TGCCCGGCACGGTGCTGGGCCTCATCTTCGGGGTGGTCAACAACACCTCCGGCGCGGCGGCCGCGGGGCTACCCGTCTTC
GCCGAAGCGCTGCGCGGCGCCTTGATGGGCGCGGGCGTGCTGGTGACCATCAGCTTGCTGGGCAGCTGGGTGCTGCGGCG
CTTTCGCGAGCGCCTCTACCCCGAACTGCCGTTGGGCTACCAGCAGATCGCCCTGGGCCTGTTCGGCGGCGTGCTGCTGG
GCGGCTTCAGCGGCAACTGGTGGGCGGCGGCGGCAGGTGGGCTGGCGCTGGGCATCGTCTCCACCCTGCTCAACGCGGCG
GCGCGCCGGGTGGTGCGGCTGCCCGAACTGCTGACCCTGGGCGGCGCGCTGGTGGCCCTGGCGCTGCTGAGCGGGCGCGG
CCCTTCGGCCCTCCTCGGCGGCGTGCAGGGCGGCCTCGCGGCGGCCGGAGCCGTGAGCTTGCTGGCCGGCGTGTACTGGT
GGCTGAGCCGCACCAACGAGGACGCCGAAGACGACAGCCCCAGCGACCCCACGGCGATGGGCTTCGGCGACGTCAAGCTG
GCCGCCGTCATCGGGGCGTTGCTGGGCTTCGACAAGTTGCTGGTGGCGGTGGCGGTGGCGGTGGTGGCCGGCGCCGTGCT
GGGCATCGTGCAGCGCCTCGTCATCGGCGAGAACCGCCTCAAGTTCGGTCCTTACCTCGCCATCGGCGCGGTGGTGGCCC
TGCTGTGGGGCGAATCAATCATGGCGGCGTACCGGGGGTATCTGGGGCTGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-94)

• Type IV leader peptidase family (Peptidase_A24) (110-349)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	62.814	100	0.641