Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DKM44_RS01760 Genome accession   NZ_CP029494
Coordinates   335584..336693 (-) Length   369 a.a.
NCBI ID   WP_245895997.1    Uniprot ID   -
Organism   Deinococcus irradiatisoli strain 17bor-2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 330584..341693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKM44_RS01740 (DKM44_01740) - 330791..331381 (+) 591 WP_109824898.1 glycerol-3-phosphate acyltransferase -
  DKM44_RS01745 (DKM44_01745) - 331378..333495 (+) 2118 WP_109824900.1 hypothetical protein -
  DKM44_RS01750 (DKM44_01750) - 333554..335263 (+) 1710 WP_245895996.1 copper amine oxidase N-terminal domain-containing protein -
  DKM44_RS01755 (DKM44_01755) - 335280..335570 (+) 291 WP_109824902.1 hypothetical protein -
  DKM44_RS01760 (DKM44_01760) dprA 335584..336693 (-) 1110 WP_245895997.1 DNA-processing protein DprA Machinery gene
  DKM44_RS01765 (DKM44_01765) - 336772..337254 (+) 483 WP_109824906.1 hypothetical protein -
  DKM44_RS01770 (DKM44_01770) - 337251..338249 (-) 999 WP_109824908.1 acetamidase/formamidase family protein -
  DKM44_RS01775 (DKM44_01775) - 338414..339379 (+) 966 WP_109824910.1 roadblock/LC7 domain-containing protein -
  DKM44_RS15320 - 339376..340965 (+) 1590 WP_245895998.1 hypothetical protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 38301.81 Da        Isoelectric Point: 7.4035

>NTDB_id=293270 DKM44_RS01760 WP_245895997.1 335584..336693(-) (dprA) [Deinococcus irradiatisoli strain 17bor-2]
MSRSPGPTSTVTSVDTDAELLALLTLRFTPGLGPRRTEALRRHFGTARAVLGAPPAQLREVPGLDRKSLGAIGMPGLGAR
AEQELQRAQSAGVQVLGRGLPGYPAALEALQDPPAILWVRGPDLPQEVVPRAVGVVGTRTASQYALMLSRQLSGDLARAG
VNIVSGLARGIDSAAHQAALDAGGVSTALLGCGVDVIYPAENARLAARLTLVSEYPLGTRPATHHFPQRNRLIAALSAGS
IVVEGNQKSGAMITATHALECGRTVFAVPGRAGDPLAAGPHRLLREGAVLTERAEDVLDELGWSGATAAPPDLSPEQALV
YNALPPLGAALLDDVATRSGLDLSQTQLALTMLGLCGLVEEQGGRYLRR

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=293270 DKM44_RS01760 WP_245895997.1 335584..336693(-) (dprA) [Deinococcus irradiatisoli strain 17bor-2]
GTGAGCCGTTCTCCCGGGCCGACCTCCACCGTCACCTCTGTGGACACCGACGCCGAGCTGCTGGCCCTGCTGACCCTGCG
CTTCACGCCGGGCCTGGGACCGAGACGCACCGAAGCGCTGCGGCGGCATTTCGGTACGGCCCGCGCGGTCCTCGGCGCGC
CGCCAGCACAGCTGCGCGAGGTGCCGGGCCTGGACCGCAAGTCGCTGGGCGCCATAGGCATGCCGGGCCTGGGCGCGCGG
GCCGAGCAGGAACTTCAGCGCGCCCAGAGCGCCGGCGTGCAGGTGCTGGGCCGGGGCCTGCCCGGCTATCCGGCAGCGCT
TGAGGCCCTGCAGGACCCGCCAGCCATCTTGTGGGTACGCGGTCCTGACCTGCCGCAGGAAGTGGTGCCGCGCGCCGTGG
GCGTGGTCGGCACCCGCACCGCCAGCCAGTACGCCCTGATGCTTTCCCGCCAGCTCTCCGGCGATCTGGCGCGGGCCGGC
GTGAACATCGTCAGCGGGCTGGCACGCGGCATCGACAGCGCGGCCCACCAGGCGGCCCTCGACGCAGGCGGAGTCAGCAC
CGCGCTGCTCGGCTGCGGCGTGGACGTGATCTACCCGGCCGAGAACGCCCGGCTGGCCGCCCGCCTGACGCTGGTGAGCG
AGTACCCGCTGGGCACCCGGCCCGCCACCCACCACTTTCCGCAGCGCAACCGCCTGATCGCCGCGCTCTCGGCCGGAAGC
ATCGTCGTCGAGGGGAACCAAAAAAGCGGGGCGATGATCACCGCCACCCACGCGCTCGAATGCGGGCGCACGGTGTTCGC
GGTGCCGGGCCGGGCCGGCGATCCGCTGGCCGCCGGGCCGCACCGCCTGCTGCGCGAGGGCGCGGTGCTCACCGAGCGGG
CCGAGGACGTGCTGGACGAACTCGGCTGGAGCGGCGCCACGGCGGCCCCGCCAGACCTCAGCCCCGAACAGGCGCTGGTG
TACAACGCCCTGCCGCCGCTCGGCGCGGCGCTGCTCGACGACGTGGCCACTCGGAGCGGCCTGGACCTCAGCCAGACGCA
GCTGGCACTGACGATGCTGGGGCTCTGCGGACTGGTGGAGGAGCAGGGCGGGCGCTACCTGCGGCGCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(89-290)

DprA winged helix domain (DprA_WH)

(306-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.19

95.664

0.585

Multiple sequence alignment