Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   DKM44_RS01460 Genome accession   NZ_CP029494
Coordinates   290542..292728 (+) Length   728 a.a.
NCBI ID   WP_109824815.1    Uniprot ID   A0A2Z3JGK7
Organism   Deinococcus irradiatisoli strain 17bor-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 285542..297728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKM44_RS01445 (DKM44_01445) - 286556..288223 (-) 1668 WP_109824811.1 long-chain fatty acid--CoA ligase -
  DKM44_RS01450 (DKM44_01450) - 288392..290095 (+) 1704 WP_146202693.1 HD domain-containing phosphohydrolase -
  DKM44_RS01455 (DKM44_01455) comEA 290117..290503 (+) 387 WP_109824814.1 helix-hairpin-helix domain-containing protein Machinery gene
  DKM44_RS01460 (DKM44_01460) comEC 290542..292728 (+) 2187 WP_109824815.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DKM44_RS01465 (DKM44_01465) - 292755..293468 (+) 714 WP_109824817.1 GNAT family N-acetyltransferase -
  DKM44_RS01470 (DKM44_01470) - 293526..293999 (-) 474 WP_109824818.1 multidrug DMT transporter -
  DKM44_RS01475 (DKM44_01475) - 294049..294588 (-) 540 WP_109824819.1 2'-5' RNA ligase family protein -
  DKM44_RS01480 (DKM44_01480) - 294645..295595 (+) 951 WP_109824820.1 NAD-dependent epimerase/dehydratase family protein -
  DKM44_RS01485 (DKM44_01485) rpsL 295841..296245 (+) 405 WP_041221741.1 30S ribosomal protein S12 -
  DKM44_RS01490 (DKM44_01490) rpsG 296430..296900 (+) 471 WP_109824822.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 728 a.a.        Molecular weight: 77474.86 Da        Isoelectric Point: 10.4724

>NTDB_id=293269 DKM44_RS01460 WP_109824815.1 290542..292728(+) (comEC) [Deinococcus irradiatisoli strain 17bor-2]
MSGSAATSQARWRAPAYPVPATLALIGGVLLGFGTLWGAAALVAALLLAWKSGKVWVLAACLLLAALGVVRERQWWSAPD
PLATWVGAQVTLQGEWDGQLLHLSDPPAAVALSPKPPGPAGQLTIRGRLVRPDGRRLPGGFDAAFWLRIQGAREVLVAAE
VRRLVPEAGVRGWFRRGLSVNLSPEQSALLRAVELGERNDLSQERFADGLNVRDAFARAGLAHLMALSGQNVALLVGALT
WLLARLLPLRLAPLRYPVLLGALAGFLWLVGPSPSLTRAVLMGGLVLLSLWLGRGKLDVYGVLGLAAIASLLYQPGWLFD
VGFQLSFLAVLGLSVSARVAALLPERWPLWLRLTLVATPCAELATLPTLLHTFGQLPLLSLPANLAAAGIMALLVPLGYL
AGLLGPLAVTVNWLLGPLAGALLWLVKVFGHAPTLSWSVVSPAGFAAYGVFALAAVLTLYRRLPLWVLPLTALLGGLGTA
LPAVIKPPSEIVYLDVGQGDSSLIRTGGLTMLIDGGGTPRGDYDVGARTVLPALRAMNVRKIDVMVATHADADHIEGLTS
VLLGLPVGELWIGERKDDPNLNMLLRAAQARGVPVREVRRGDAVRSGEATFTVLWPVGAPFSKADNDNSVVIKLDTPRFH
TVFLGDLPNPLEAELGVGHLDLLKTAHHGSRFSSGEAFLNQTRPRDAVISVGRNTYGHPNPQVLDRLAALGVRVWRTDQV
GTLRWPLP

Nucleotide


Download         Length: 2187 bp        

>NTDB_id=293269 DKM44_RS01460 WP_109824815.1 290542..292728(+) (comEC) [Deinococcus irradiatisoli strain 17bor-2]
GTGTCCGGCTCAGCCGCCACCTCGCAAGCCCGCTGGCGCGCACCGGCCTACCCGGTGCCGGCCACTCTGGCCCTGATCGG
TGGGGTGCTGCTGGGGTTCGGCACGCTGTGGGGTGCGGCGGCGCTCGTCGCGGCCTTGCTGCTGGCCTGGAAGTCCGGAA
AAGTCTGGGTGCTGGCCGCCTGCCTGCTGCTGGCGGCGCTGGGGGTGGTGCGCGAGCGGCAGTGGTGGAGCGCGCCAGAC
CCGCTGGCGACGTGGGTGGGCGCGCAGGTCACGCTGCAAGGCGAATGGGACGGTCAGCTGCTGCATCTGAGCGATCCGCC
CGCCGCCGTGGCCCTCTCGCCCAAACCGCCGGGGCCGGCCGGGCAGCTGACCATCCGTGGCCGCCTGGTGCGTCCGGACG
GCCGGCGCCTTCCCGGCGGCTTCGACGCGGCATTCTGGCTGCGCATTCAGGGCGCACGTGAAGTGCTGGTGGCGGCCGAG
GTGCGCCGCCTGGTTCCCGAAGCGGGGGTGCGCGGCTGGTTCCGGCGCGGCCTGAGCGTGAACCTCAGCCCCGAGCAGTC
GGCGCTGCTGCGGGCGGTCGAGCTGGGCGAGCGCAACGACCTCTCGCAGGAGCGCTTCGCGGACGGCCTGAACGTCCGTG
ACGCCTTCGCGCGGGCGGGCCTGGCGCATCTGATGGCGCTCAGTGGGCAGAACGTGGCCCTGCTCGTCGGCGCGCTGACC
TGGCTGCTGGCCCGCCTGCTCCCGCTGCGTCTGGCCCCGCTGCGCTATCCGGTGCTGCTCGGGGCGTTGGCGGGTTTTCT
GTGGCTGGTGGGGCCTTCGCCCAGCCTCACCCGCGCCGTGCTGATGGGCGGGCTGGTGCTGCTCTCCTTGTGGCTGGGGC
GCGGCAAGCTCGACGTGTACGGGGTGCTGGGCTTGGCGGCCATCGCCAGCTTGCTGTATCAGCCGGGCTGGCTGTTCGAC
GTGGGCTTTCAACTCAGTTTCCTGGCAGTGCTGGGCCTGAGCGTCTCGGCGCGGGTGGCGGCACTGCTACCTGAGCGCTG
GCCCTTGTGGCTGCGCCTGACGCTGGTCGCCACGCCCTGCGCCGAACTCGCCACGCTGCCCACCCTGCTGCACACGTTCG
GACAGCTGCCGCTGCTGAGCTTGCCGGCCAACCTGGCGGCTGCCGGGATCATGGCCCTGCTGGTGCCGCTGGGTTATCTG
GCCGGGCTGCTGGGACCGCTGGCCGTGACGGTCAACTGGCTGCTGGGTCCGCTGGCGGGCGCCCTGCTGTGGCTGGTCAA
GGTGTTCGGGCACGCGCCGACCCTCAGCTGGAGCGTGGTCAGCCCGGCAGGGTTCGCCGCTTACGGCGTGTTTGCACTCG
CGGCGGTGCTGACGCTCTACCGCCGACTGCCGCTGTGGGTTTTGCCGCTCACCGCCCTGCTCGGCGGGCTCGGGACAGCC
CTGCCGGCGGTCATCAAGCCCCCGAGTGAGATCGTCTACCTCGACGTGGGCCAGGGCGACAGTTCGCTGATCCGCACCGG
GGGCCTCACCATGCTGATCGACGGCGGCGGCACGCCCAGAGGCGACTATGACGTGGGCGCGCGCACCGTTTTGCCGGCGC
TGAGGGCCATGAACGTCCGGAAGATCGACGTGATGGTCGCCACCCACGCCGACGCCGACCACATCGAGGGCCTCACCAGC
GTGCTGCTCGGCCTGCCGGTGGGGGAGTTGTGGATCGGCGAGCGCAAGGACGATCCCAACCTCAACATGCTGCTGCGGGC
TGCCCAGGCGCGGGGCGTGCCGGTGCGCGAGGTGCGTCGGGGCGACGCCGTGCGCTCGGGCGAGGCGACCTTCACGGTGC
TGTGGCCGGTCGGGGCGCCCTTCTCGAAGGCCGACAATGACAACAGCGTGGTGATCAAGCTCGACACCCCGCGTTTTCAC
ACCGTCTTTCTGGGCGATCTGCCGAACCCGCTCGAAGCTGAACTGGGCGTGGGTCACCTCGATCTGCTCAAGACCGCCCA
CCACGGCAGCCGATTCTCGAGCGGTGAGGCGTTCCTGAACCAGACCCGGCCCCGCGACGCGGTGATCAGCGTGGGCCGCA
ACACCTACGGCCATCCCAACCCCCAGGTGCTCGATCGTCTGGCGGCGCTGGGCGTCAGGGTCTGGCGCACCGATCAGGTC
GGCACGCTGCGCTGGCCGCTGCCCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(495-692)

Competence protein (Competence)

(212-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z3JGK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.484

90.522

0.538

Multiple sequence alignment