Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DKM44_RS01455 Genome accession   NZ_CP029494
Coordinates   290117..290503 (+) Length   128 a.a.
NCBI ID   WP_109824814.1    Uniprot ID   A0A2Z3JJE8
Organism   Deinococcus irradiatisoli strain 17bor-2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 285117..295503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKM44_RS01445 (DKM44_01445) - 286556..288223 (-) 1668 WP_109824811.1 long-chain fatty acid--CoA ligase -
  DKM44_RS01450 (DKM44_01450) - 288392..290095 (+) 1704 WP_146202693.1 HD domain-containing phosphohydrolase -
  DKM44_RS01455 (DKM44_01455) comEA 290117..290503 (+) 387 WP_109824814.1 helix-hairpin-helix domain-containing protein Machinery gene
  DKM44_RS01460 (DKM44_01460) comEC 290542..292728 (+) 2187 WP_109824815.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DKM44_RS01465 (DKM44_01465) - 292755..293468 (+) 714 WP_109824817.1 GNAT family N-acetyltransferase -
  DKM44_RS01470 (DKM44_01470) - 293526..293999 (-) 474 WP_109824818.1 multidrug DMT transporter -
  DKM44_RS01475 (DKM44_01475) - 294049..294588 (-) 540 WP_109824819.1 2'-5' RNA ligase family protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 13310.70 Da        Isoelectric Point: 8.0699

>NTDB_id=293268 DKM44_RS01455 WP_109824814.1 290117..290503(+) (comEA) [Deinococcus irradiatisoli strain 17bor-2]
MLDAPPSERLAAALLSVLALLCGGWALWPAVHPAPLHPLISRTGLPAPEQPPEAAPVYPTTASIRPLISGRLDLNTASQA
QLEALPGIGPAMAARLIAARPYHTLADLDAVRGVGPVLLGKLTPLVRF

Nucleotide


Download         Length: 387 bp        

>NTDB_id=293268 DKM44_RS01455 WP_109824814.1 290117..290503(+) (comEA) [Deinococcus irradiatisoli strain 17bor-2]
ATGCTTGACGCGCCCCCTTCCGAGCGCCTGGCGGCGGCGCTGCTCAGCGTGCTGGCCCTGCTGTGCGGCGGCTGGGCGCT
GTGGCCCGCCGTGCACCCGGCGCCCCTGCACCCGCTGATCAGCCGGACCGGGCTGCCGGCGCCGGAACAGCCGCCCGAAG
CGGCGCCGGTGTATCCCACCACTGCCAGCATCCGGCCGCTGATCTCCGGCCGACTCGATCTCAACACCGCCTCGCAGGCG
CAGCTCGAAGCTTTGCCCGGCATCGGCCCGGCGATGGCGGCGCGCTTGATCGCCGCCCGGCCATACCACACCCTCGCCGA
CCTGGACGCGGTGCGCGGGGTGGGGCCGGTGCTGCTGGGCAAGCTCACGCCGCTGGTTCGTTTTTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z3JJE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.065

96.875

0.563

Multiple sequence alignment