Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   EQI87_RS02420 Genome accession   NZ_CP035166
Coordinates   468469..468903 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM103971     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 463469..473903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI87_RS02390 (EQI87_02390) ydaD 464116..464976 (+) 861 WP_128484030.1 SDR family oxidoreductase -
  EQI87_RS02395 (EQI87_02395) lyxE 464992..465495 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  EQI87_RS02400 (EQI87_02400) ydaF 465583..466134 (+) 552 WP_046380787.1 GNAT family protein -
  EQI87_RS02405 (EQI87_02405) ydaG 466212..466634 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  EQI87_RS02410 (EQI87_02410) amj 467140..467949 (+) 810 WP_032722918.1 lipid II flippase Amj -
  EQI87_RS02415 (EQI87_02415) ydzA 467994..468284 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  EQI87_RS02420 (EQI87_02420) lrpC 468469..468903 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  EQI87_RS02425 (EQI87_02425) topB 468968..471151 (+) 2184 WP_029317313.1 DNA topoisomerase III -
  EQI87_RS02430 (EQI87_02430) ephJ 471353..472441 (+) 1089 WP_003246551.1 lipoprotein -
  EQI87_RS02435 (EQI87_02435) epsK 472422..473273 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=293263 EQI87_RS02420 WP_003246585.1 468469..468903(+) (lrpC) [Bacillus subtilis strain SRCM103971]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=293263 EQI87_RS02420 WP_003246585.1 468469..468903(+) (lrpC) [Bacillus subtilis strain SRCM103971]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment