Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DK182_RS09665 Genome accession   NZ_CP029491
Coordinates   1974614..1975978 (-) Length   454 a.a.
NCBI ID   WP_029236682.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain 10919     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1969614..1980978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK182_RS09645 (DK181_09645) - 1970360..1971116 (-) 757 Protein_1821 CPBP family intramembrane glutamic endopeptidase -
  DK182_RS09650 (DK181_09650) - 1971377..1972237 (-) 861 WP_004205757.1 DegV family protein -
  DK182_RS09655 (DK181_09655) - 1972452..1972963 (-) 512 Protein_1823 NYN domain-containing protein -
  DK182_RS09660 (DK181_09660) rlmB 1973880..1974617 (-) 738 WP_019777855.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DK182_RS09665 (DK181_09665) radA 1974614..1975978 (-) 1365 WP_029236682.1 DNA repair protein RadA Machinery gene
  DK182_RS09670 (DK181_09670) - 1976062..1976526 (-) 465 WP_019776493.1 cysteine hydrolase family protein -
  DK182_RS09675 (DK181_09675) - 1976535..1976981 (-) 447 WP_019776492.1 dUTP diphosphatase -
  DK182_RS09680 (DK181_09680) - 1977299..1978327 (+) 1029 WP_019785515.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  DK182_RS09685 (DK181_09685) galU 1978366..1979268 (+) 903 WP_109833698.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  DK182_RS09690 (DK181_09690) - 1979558..1979986 (+) 429 WP_002961690.1 hypothetical protein -
  DK182_RS09695 (DK181_09695) - 1980093..1980695 (-) 603 WP_002961692.1 AAA family ATPase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49651.00 Da        Isoelectric Point: 6.6527

>NTDB_id=293236 DK182_RS09665 WP_029236682.1 1974614..1975978(-) (radA) [Streptococcus sobrinus strain 10919]
MAKKKSTFVCQECGYNSPKYLGRCPNCGSWSSFVEEKEVEEVKNARVSLTGEKTKPTKLKDVSSIDYARTKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYIYAETNMQNIRTEIE
RLQPDFLIIDSIQTVMSPEITSVQGSVSQVREVTAELMQLAKSNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQTGGLVEVLNPSQLFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEAPTNAQDAFIGEIGLTGEIR
RVNRIEQRLNEATKLGFTKVYAPKNALHGIVIPKNIQVIGVSTVGEVLKKVFKS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=293236 DK182_RS09665 WP_029236682.1 1974614..1975978(-) (radA) [Streptococcus sobrinus strain 10919]
ATCGCTAAGAAAAAATCAACCTTTGTCTGTCAGGAATGTGGCTACAATTCGCCCAAGTATCTGGGCCGTTGTCCCAACTG
TGGTTCCTGGTCCTCCTTTGTCGAAGAAAAGGAAGTCGAAGAGGTCAAGAATGCCAGGGTTTCCTTGACCGGCGAAAAGA
CCAAGCCAACCAAGTTGAAAGATGTTTCCTCCATTGATTATGCTAGGACCAAGACGGATATGGATGAGTTCAACCGTGTC
TTGGGGGGTGGTGTAGTGCCAGGCAGTCTGGTTCTCATCGGTGGCGACCCCGGTATTGGGAAATCAACCTTACTCTTGCA
AGTCTCGACCCAGCTGGCTAATAAGGGAACGGTTCTCTATGTTTCAGGGGAAGAATCCGCCGAGCAAATCAAGCTCCGCA
GCGAGAGACTGGGCGATATTGATAATGAATTTTACATCTACGCCGAGACCAATATGCAAAATATCCGCACGGAAATTGAG
CGGCTGCAACCAGATTTTCTGATTATTGACTCCATCCAGACAGTCATGAGTCCCGAGATTACTAGTGTGCAGGGCTCGGT
CTCCCAGGTGCGAGAGGTAACGGCTGAGCTCATGCAGCTGGCCAAGAGTAATAATATTGCTACCTTCATTGTTGGCCATG
TGACCAAGGAAGGAACCCTGGCTGGTCCTAGAATGCTGGAGCACATGGTGGATACGGTCCTTTATTTTGAAGGCGAACGC
CACCACACCTTTCGGATTTTGCGAGCAGTCAAAAATCGTTTCGGTTCAACCAACGAAATCGGTATTTTTGAGATGCAGAC
GGGCGGTCTGGTTGAGGTCCTCAATCCCAGCCAGCTCTTTTTAGAGGAACGTCTGGACGGGGCAACGGGCTCGGCTATTG
TTGTCACCATGGAAGGAACCCGGCCCATCTTAGCCGAGGTGCAAGCCTTAGTCACACCGACTGTTTTTGGTAATGCCAAG
CGAACCACGACAGGATTGGATTTCAATCGGGTTAGCCTGATTATGGCCGTATTGGAGAAACGCTGTGGACTCCTTCTGCA
AAATCAGGATGCCTACCTCAAGTCGGCTGGTGGGGTCAAATTGGACGAGCCTGCCATCGACCTAGCTGTGGCAGTCGCCA
TCGCTTCCTCCTACAAGGAAGCACCGACCAATGCCCAAGATGCTTTCATCGGGGAAATCGGTCTGACTGGTGAAATTCGT
CGGGTCAACCGTATTGAGCAACGCCTCAATGAAGCTACCAAACTGGGCTTTACCAAGGTTTACGCTCCTAAAAATGCCTT
GCATGGCATTGTAATTCCTAAAAACATCCAAGTCATTGGCGTTTCAACCGTCGGGGAAGTATTAAAGAAAGTATTTAAGT
CATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

88.053

99.559

0.877
  radA Streptococcus pneumoniae D39

87.832

99.559

0.874
  radA Streptococcus pneumoniae R6

87.832

99.559

0.874
  radA Streptococcus pneumoniae Rx1

87.832

99.559

0.874
  radA Streptococcus pneumoniae TIGR4

87.832

99.559

0.874
  radA Streptococcus mitis SK321

87.611

99.559

0.872
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.78

0.626

Multiple sequence alignment