Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DK182_RS09150 Genome accession   NZ_CP029491
Coordinates   1869091..1869816 (-) Length   241 a.a.
NCBI ID   WP_002960055.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain 10919     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1864091..1874816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK182_RS09135 (DK181_09135) trmB 1866269..1866904 (-) 636 WP_019770723.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DK182_RS09140 (DK181_09140) ccrZ 1866905..1867696 (-) 792 WP_002960058.1 cell cycle regulator CcrZ -
  DK182_RS09145 (DK181_09145) - 1868042..1869088 (-) 1047 WP_002960056.1 ABC transporter permease -
  DK182_RS09150 (DK181_09150) pptA 1869091..1869816 (-) 726 WP_002960055.1 ABC transporter ATP-binding protein Regulator
  DK182_RS09155 (DK181_09155) - 1870094..1870513 (+) 420 WP_002960053.1 HIT family protein -
  DK182_RS09160 (DK181_09160) - 1870510..1870800 (+) 291 WP_002960051.1 hypothetical protein -
  DK182_RS09165 (DK181_09165) brpA 1870987..1872222 (-) 1236 WP_109833675.1 biofilm formation/cell division transcriptional regulator BrpA -
  DK182_RS09170 (DK181_09170) - 1872231..1872743 (-) 513 WP_109833676.1 GNAT family N-acetyltransferase -
  DK182_RS09175 (DK181_09175) tsaE 1872736..1873176 (-) 441 WP_019769141.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DK182_RS09180 (DK181_09180) - 1873350..1874768 (-) 1419 WP_109833677.1 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26757.23 Da        Isoelectric Point: 4.6733

>NTDB_id=293234 DK182_RS09150 WP_002960055.1 1869091..1869816(-) (pptA) [Streptococcus sobrinus strain 10919]
MLKIDKMTGGYRNIPVLKEISFEVPDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGAITIDDLSLAQDKEAYRKKIGFIP
ETPSLYEELTLKEHLETVAMAYDIPTAEALDRAQKLLQLFRLEDKLDWFPVNFSKGMKQKVMIICAFIVQPRLLIVDEPF
LGLDPLAINDLMDLLEEEKAKGTAILMSTHVLDSAQKMCDSFVILHQGQIRAQGTLADLRASFGQADASLNDLYMALTKE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=293234 DK182_RS09150 WP_002960055.1 1869091..1869816(-) (pptA) [Streptococcus sobrinus strain 10919]
ATGTTAAAAATAGACAAGATGACAGGAGGCTACCGCAATATTCCTGTCTTAAAAGAGATTTCCTTTGAGGTGCCCGACGG
TCAGCTGGTCGGTCTCATCGGTCTTAATGGGGCTGGGAAATCAACGACCATCAAGGAGATTATTGGGCTTCTAACTCCCT
ATCAGGGGGCTATTACTATTGATGACCTCAGCTTAGCTCAGGACAAGGAAGCCTACCGGAAGAAGATTGGCTTTATTCCA
GAAACGCCCAGCCTCTACGAGGAATTGACTCTGAAAGAGCATCTGGAAACCGTAGCCATGGCTTATGATATTCCGACGGC
TGAGGCCTTGGACCGAGCTCAAAAGCTTCTTCAACTTTTCCGCCTAGAGGATAAATTGGACTGGTTCCCTGTCAACTTTT
CTAAAGGCATGAAGCAGAAGGTTATGATTATCTGTGCCTTCATCGTCCAGCCTCGTCTTTTAATCGTTGATGAGCCTTTC
TTGGGTCTGGACCCCCTAGCCATCAATGATTTGATGGATCTCTTAGAAGAAGAAAAAGCCAAGGGAACCGCCATTCTCAT
GTCCACCCATGTCTTGGATTCGGCCCAAAAGATGTGTGATAGCTTTGTTATCCTCCATCAGGGGCAAATCAGGGCACAAG
GGACTCTGGCGGATTTGCGGGCCAGCTTTGGTCAGGCAGATGCCAGTCTCAATGACCTCTACATGGCTTTGACAAAAGAG
GTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.477

99.17

0.739
  pptA Streptococcus thermophilus LMD-9

73.64

99.17

0.73

Multiple sequence alignment