Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   EQI56_RS20870 Genome accession   NZ_CP035165
Coordinates   4015618..4016307 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain SRCM103881     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4010618..4021307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI56_RS20850 (EQI56_20850) yxeA 4011523..4011870 (-) 348 WP_021481023.1 YxeA family protein -
  EQI56_RS20855 (EQI56_20855) yxdM 4011884..4013752 (-) 1869 WP_017696088.1 ABC transporter permease YxdM -
  EQI56_RS20860 (EQI56_20860) yxdL 4013727..4014500 (-) 774 WP_041850316.1 ABC transporter ATP-binding protein YxdL -
  EQI56_RS20865 (EQI56_20865) yxdK 4014644..4015621 (-) 978 WP_043940238.1 two-component system sensor histidine kinase YxdK -
  EQI56_RS20870 (EQI56_20870) braR 4015618..4016307 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  EQI56_RS20875 (EQI56_20875) iolJ 4016415..4017287 (-) 873 WP_014478478.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  EQI56_RS20880 (EQI56_20880) iolI 4017308..4018144 (-) 837 WP_015483926.1 2-keto-myo-inositol isomerase -
  EQI56_RS20885 (EQI56_20885) iolH 4018230..4019099 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase -
  EQI56_RS20890 (EQI56_20890) iolG 4019119..4020153 (-) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=293234 EQI56_RS20870 WP_003243527.1 4015618..4016307(-) (braR) [Bacillus subtilis strain SRCM103881]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=293234 EQI56_RS20870 WP_003243527.1 4015618..4016307(-) (braR) [Bacillus subtilis strain SRCM103881]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCTGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment