Detailed information NTG0293232

Bioinformatically predicted

Overview

• Name: comB/nlmE
• Type: Regulator
• Locus tag: DK182_RS09030
• Genome accession: NZ_CP029491
• Coordinates: 1841809..1842732 (-)
• Length: 307 a.a.
• NCBI ID: WP_002961554.1
• Uniprot ID: -
• Organism: Streptococcus sobrinus strain 10919
• Function: transport of ComC (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1840629..1841327	1841809..1842732	flank	482

Gene organization within MGE regions

Location: 1840629..1842732

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DK182_RS09025 (DK181_09025)	-	1840629..1841647 (-)	1019	Protein_1698	IS30 family transposase	-
DK182_RS09030 (DK181_09030)	comB/nlmE	1841809..1842732 (-)	924	WP_002961554.1	HlyD family efflux transporter periplasmic adaptor subunit	Regulator

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 35187.78 Da
• Isoelectric Point: 10.3331

>NTDB_id=293232 DK182_RS09030 WP_002961554.1 1841809..1842732(-) (comB/nlmE) [Streptococcus sobrinus strain 10919]
MNPKLLESAEFYRRRYHNFATVLIVPLVILIIFIGVFLCFAKKEITVISQGEVAPTKVLAVIQSVSDTSIAQNKLDDNTK
VDKGDLLVQYTENAEPEQKDAQKNTIKDRNDRLDKEIEKEEKKTKKKYKKLSKKERKKREKKDQKKKEKKKKDRDSEDKK
ETDHVSLFAPESGVIHTNSKYDGLNILPKWSEIAQIYPDIQKTKTVLITYYVSSDDVVSMKKGQTTRLSLEKKGNDKLTV
QGKINSVAASATTTKKGNLFKVTAKVKLSKKDSKLVKYGMTGKTVTVIDKKTYFDYFKDKLLHKVED

Nucleotide

• Length: 924 bp

>NTDB_id=293232 DK182_RS09030 WP_002961554.1 1841809..1842732(-) (comB/nlmE) [Streptococcus sobrinus strain 10919]
ATGAATCCAAAATTACTTGAAAGTGCGGAATTTTACCGTCGTCGCTACCATAATTTTGCGACTGTTCTTATTGTGCCCTT
GGTTATCTTGATTATCTTCATTGGTGTTTTCCTCTGCTTTGCCAAAAAGGAAATCACAGTGATTTCTCAAGGTGAAGTGG
CGCCAACAAAGGTATTGGCCGTTATCCAGTCTGTTAGTGACACATCGATTGCACAAAATAAATTAGACGACAACACTAAG
GTTGATAAGGGTGACCTCTTGGTGCAGTACACAGAGAATGCGGAACCAGAACAAAAGGATGCCCAAAAGAATACAATCAA
GGACCGCAATGACCGCCTAGACAAGGAAATAGAAAAGGAAGAGAAGAAAACAAAGAAAAAGTATAAAAAGCTTTCCAAAA
AGGAAAGGAAGAAACGGGAGAAAAAAGACCAGAAGAAGAAGGAGAAAAAGAAAAAAGACCGAGATTCAGAGGATAAAAAA
GAAACAGACCACGTTTCCCTCTTTGCTCCTGAGTCAGGAGTGATCCATACTAACAGTAAGTATGATGGCCTCAATATCCT
TCCTAAGTGGTCAGAAATTGCCCAAATCTATCCTGATATTCAAAAGACGAAAACCGTCTTAATTACCTACTACGTCTCAT
CTGACGATGTTGTTTCCATGAAGAAGGGCCAAACGACCCGTTTATCGCTTGAAAAGAAAGGCAATGATAAACTGACCGTC
CAAGGGAAAATCAATAGTGTCGCTGCATCGGCCACGACGACCAAGAAGGGCAACCTCTTCAAGGTCACAGCCAAGGTCAA
GCTGTCCAAGAAGGACAGCAAGCTGGTCAAGTATGGGATGACTGGAAAGACAGTCACCGTCATTGATAAAAAGACCTACT
TCGATTACTTCAAGGATAAATTGCTTCACAAGGTGGAGGATTAA

Domains

Predicted by InterproScan.

• HlyD family secretion protein (HlyD_3) (167-279)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB/nlmE	Streptococcus mutans UA159	68.404	100	0.684