Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DK182_RS07525 Genome accession   NZ_CP029491
Coordinates   1561023..1562828 (-) Length   601 a.a.
NCBI ID   WP_019786288.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain 10919     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1556023..1567828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK182_RS07510 (DK181_07510) murD 1556667..1558022 (-) 1356 WP_002959459.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  DK182_RS07515 (DK181_07515) - 1558344..1558646 (-) 303 WP_002959460.1 DUF3165 family protein -
  DK182_RS07520 (DK181_07520) typA 1558976..1560823 (-) 1848 WP_019770960.1 translational GTPase TypA -
  DK182_RS07525 (DK181_07525) pepF 1561023..1562828 (-) 1806 WP_019786288.1 oligoendopeptidase F Regulator
  DK182_RS07530 (DK181_07530) - 1562841..1563821 (-) 981 WP_019786287.1 competence protein CoiA -
  DK182_RS07535 (DK181_07535) - 1564089..1564900 (+) 812 Protein_1425 transporter substrate-binding domain-containing protein -
  DK182_RS07540 (DK181_07540) - 1564919..1565569 (+) 651 WP_019777635.1 amino acid ABC transporter permease -
  DK182_RS07545 (DK181_07545) - 1565579..1566886 (+) 1308 WP_019777636.1 lanthionine synthetase LanC family protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68624.51 Da        Isoelectric Point: 4.5078

>NTDB_id=293222 DK182_RS07525 WP_019786288.1 1561023..1562828(-) (pepF) [Streptococcus sobrinus strain 10919]
MTDNRALIDEKYKWDLSSIFASDQDWEAQYQGLADAIEQAQDLSGHLAQSAQDLLRVTQTYLNLARCLEKVFVYASMKND
QDTTVATYQELAAKATSLSAKYSQAFAFFEPEVLALGEGKFAEFLQEESELGLYRHFFGQIFSQQAHVLNQEKEELLAQA
QEVLEAGAETYEILDNADISFPSVLDEEGQEVDLSHGNFITLMESKDRRVRQAAYEAYYSTYQQFQHTYAKTLATTVKQH
NFSAKVRHYDSARQAAMEANHIPEGVYDILLSTVHKYLPLLRGYMSLRQEILGLDDLKMYDVYTPLSKLDMTYTYEDAKG
KALEVLSVFGLDYQARVEEALSQGWIDVAANKGKRSGAYSGGSYDTKAFILLNWQDTLDNLYTLVHEMGHSMHSTFTREN
QPYVYGDYSIFLAEIASTTNENIMTETLLKEAKDDKERFALLNYYLDSFKGTVFRQTQFAEFEQAIHEADAKGQVLTSQY
LNELYADLNQAYYGLPKEDNPQIQYEWARIPHFYYNFYVYQYATGFASASYLAEKIVHGDQADKARYLDYLKAGSSAYPL
EVIAKAGVDMTQADYLEGAFQVFAKRLEELESLVKQGVHRE

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=293222 DK182_RS07525 WP_019786288.1 1561023..1562828(-) (pepF) [Streptococcus sobrinus strain 10919]
ATGACAGATAACCGTGCACTTATTGATGAGAAGTACAAGTGGGATTTGAGCAGTATTTTTGCCAGCGACCAGGACTGGGA
GGCCCAATATCAGGGTCTAGCAGATGCTATCGAGCAGGCCCAAGACCTGTCAGGCCACTTGGCCCAGTCAGCCCAAGACT
TATTAAGAGTTACCCAGACTTATTTAAACCTGGCTCGTTGCCTGGAGAAGGTCTTTGTTTATGCTTCCATGAAAAATGAC
CAGGACACGACAGTAGCCACTTATCAGGAGTTGGCAGCTAAGGCGACAAGTCTGTCAGCTAAGTACAGTCAGGCCTTTGC
CTTTTTTGAGCCAGAAGTATTGGCCTTGGGAGAAGGGAAGTTTGCTGAATTTTTGCAGGAGGAATCAGAATTAGGTCTCT
ACCGGCATTTCTTTGGGCAAATCTTCTCCCAACAGGCCCATGTCCTAAATCAAGAAAAAGAAGAGCTCTTAGCTCAGGCT
CAGGAGGTTCTTGAGGCGGGGGCGGAAACCTATGAGATTCTGGACAATGCGGACATCAGTTTTCCAAGCGTCCTTGATGA
GGAAGGTCAAGAAGTTGACTTGAGCCATGGTAATTTTATCACCCTGATGGAATCCAAGGACAGGCGGGTTCGGCAGGCTG
CCTATGAAGCCTATTACAGTACCTACCAGCAGTTTCAGCATACCTATGCTAAGACCCTGGCCACGACTGTCAAGCAGCAT
AATTTTTCGGCCAAGGTTCGCCACTATGACTCTGCTCGTCAGGCAGCTATGGAGGCCAATCATATCCCAGAAGGGGTCTA
TGACATCCTCCTAAGTACGGTCCACAAGTATTTGCCTCTCTTGCGAGGCTACATGAGCTTGCGGCAGGAAATTTTGGGCT
TGGATGATTTGAAAATGTATGATGTCTACACGCCCCTGTCAAAACTGGATATGACCTACACTTACGAGGATGCCAAAGGC
AAGGCTCTAGAAGTCTTGTCGGTCTTTGGCCTTGATTACCAGGCACGAGTAGAAGAGGCCCTGTCCCAGGGCTGGATTGA
TGTTGCAGCCAATAAGGGCAAACGCTCGGGAGCATATTCGGGTGGCTCCTATGATACCAAGGCTTTTATCCTGCTCAACT
GGCAGGATACCCTGGACAATCTCTACACCCTGGTCCATGAGATGGGCCACAGTATGCATTCGACCTTTACCCGAGAAAAT
CAGCCCTATGTCTACGGAGATTATTCTATCTTCTTGGCTGAGATTGCTTCGACGACCAATGAAAATATCATGACCGAGAC
CCTGCTTAAGGAAGCCAAGGACGACAAGGAACGCTTTGCCCTGCTCAATTATTATCTGGACAGTTTCAAGGGGACGGTTT
TTCGTCAGACACAGTTTGCGGAATTTGAGCAAGCTATTCATGAAGCTGATGCTAAGGGTCAGGTCTTGACCAGTCAGTAC
CTCAATGAGCTTTATGCTGACCTCAACCAGGCCTACTATGGTCTGCCCAAGGAAGACAATCCTCAAATTCAGTACGAGTG
GGCTCGGATTCCCCATTTTTACTATAATTTTTATGTCTATCAATATGCGACAGGCTTTGCGTCGGCCAGCTATCTGGCTG
AGAAAATTGTCCACGGGGACCAGGCCGACAAGGCCCGCTATTTGGATTATCTCAAAGCAGGTAGTTCGGCCTATCCGCTG
GAAGTCATCGCCAAGGCTGGGGTTGATATGACTCAAGCCGACTACTTAGAGGGGGCCTTTCAAGTCTTTGCCAAACGCCT
GGAAGAATTGGAAAGCCTAGTTAAACAGGGAGTGCATAGGGAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

65.109

99.667

0.649

Multiple sequence alignment