Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   DK182_RS07360 Genome accession   NZ_CP029491
Coordinates   1520062..1521150 (-) Length   362 a.a.
NCBI ID   WP_019777234.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain 10919     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1515062..1526150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK182_RS07340 (DK181_07340) - 1515577..1517319 (-) 1743 WP_109833635.1 ABC transporter ATP-binding protein -
  DK182_RS07345 (DK181_07345) - 1517573..1518103 (-) 531 WP_019777233.1 VanZ family protein -
  DK182_RS07350 (DK181_07350) rlmN 1518096..1519226 (-) 1131 WP_019770413.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  DK182_RS07355 (DK181_07355) - 1519228..1519860 (-) 633 WP_019769372.1 YutD family protein -
  DK182_RS07360 (DK181_07360) sepM 1520062..1521150 (-) 1089 WP_019777234.1 SepM family pheromone-processing serine protease Regulator
  DK182_RS07365 (DK181_07365) coaD 1521137..1521628 (-) 492 WP_002962602.1 pantetheine-phosphate adenylyltransferase -
  DK182_RS07370 (DK181_07370) rsmD 1521618..1522157 (-) 540 WP_019775652.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  DK182_RS07375 (DK181_07375) - 1522332..1523411 (-) 1080 WP_019769375.1 MmcQ/YjbR family DNA-binding protein -
  DK182_RS07380 (DK181_07380) asnA 1523877..1524869 (-) 993 WP_019777713.1 aspartate--ammonia ligase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 39362.08 Da        Isoelectric Point: 9.9385

>NTDB_id=293221 DK182_RS07360 WP_019777234.1 1520062..1521150(-) (sepM) [Streptococcus sobrinus strain 10919]
MTTSKSSQAASKKGVWGFIKRIKWWLLGGFALLALLFCFLVPLPYYVEAPGGAYDIDQVMTVNGKTNKDKGSYNFVAVEV
RPGTVFNLAYSWLNPDTTQIVSKKELTGGTSTKDYELINQYYMENSQNTAIYQALKLAGKDAKLDYKGVYVLQVADNSSF
KGTLNIADTVTGINGKSFKSSKDLVKYVTGLKLDSQVTVQYTSQGKKKSADGKVVKLKNGKNGIGITLTDHTEVSSNDKV
KFSTQGVGGPSAGLMFTLSIYDQLNKDDLLKGRMIAGTGTIEPDDSVGDIGGVSQKVVSADKSGAEIFFVPDNPVAKADK
KYYPKGNNYQEAKKMAKKLGSKMKIVPVKTAQDAIDYLEKTK

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=293221 DK182_RS07360 WP_019777234.1 1520062..1521150(-) (sepM) [Streptococcus sobrinus strain 10919]
ATGACAACAAGTAAGTCAAGCCAGGCCGCCTCTAAAAAGGGAGTTTGGGGCTTTATCAAACGGATTAAATGGTGGCTTCT
GGGAGGTTTTGCCCTTCTGGCTCTGCTCTTTTGCTTTCTCGTTCCTCTGCCCTATTATGTTGAGGCTCCTGGCGGCGCCT
ATGATATCGATCAGGTCATGACCGTAAATGGCAAGACTAATAAGGATAAGGGTTCCTACAATTTTGTGGCAGTCGAAGTT
CGCCCAGGAACAGTCTTTAATCTGGCCTATTCCTGGCTCAATCCTGATACCACCCAGATTGTTTCCAAAAAAGAACTAAC
CGGTGGCACCAGCACCAAGGACTATGAGCTGATTAATCAGTACTACATGGAAAATTCCCAAAATACGGCTATTTATCAGG
CCCTCAAGCTGGCTGGTAAGGATGCCAAGTTGGATTACAAGGGGGTCTATGTGCTCCAGGTCGCTGATAATTCAAGCTTC
AAGGGGACTCTCAATATTGCGGATACGGTGACGGGAATTAATGGCAAGAGCTTCAAGTCTTCCAAGGACCTGGTCAAATA
TGTCACAGGCCTCAAGTTGGACTCTCAGGTGACCGTCCAATACACCAGCCAAGGTAAGAAGAAATCAGCTGATGGCAAGG
TGGTCAAGCTCAAGAATGGCAAGAATGGTATCGGCATTACTCTGACCGACCATACCGAAGTCAGCTCAAACGATAAGGTG
AAATTCTCCACCCAAGGCGTTGGCGGACCTAGTGCAGGTCTTATGTTTACCCTGTCCATCTACGACCAGCTCAACAAGGA
TGACCTCCTCAAGGGACGGATGATTGCCGGAACAGGAACCATAGAGCCGGATGATTCGGTTGGTGACATCGGCGGAGTTT
CGCAGAAGGTCGTTTCCGCTGATAAGTCAGGTGCCGAAATTTTCTTTGTTCCTGACAATCCCGTTGCCAAGGCAGACAAG
AAGTACTACCCCAAGGGGAACAACTACCAAGAAGCCAAAAAAATGGCCAAGAAGCTGGGCAGCAAGATGAAAATCGTTCC
CGTCAAGACGGCTCAAGATGCTATCGACTACCTAGAAAAAACCAAATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(146-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

65.789

94.475

0.622

Multiple sequence alignment