Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   DK182_RS00490 Genome accession   NZ_CP029491
Coordinates   75954..76577 (+) Length   207 a.a.
NCBI ID   WP_002962720.1    Uniprot ID   U2IUC9
Organism   Streptococcus sobrinus strain 10919     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 76760..77779 75954..76577 flank 183


Gene organization within MGE regions


Location: 75954..77779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK182_RS00490 (DK181_00490) comX 75954..76577 (+) 624 WP_002962720.1 sigma-70 family RNA polymerase sigma factor Regulator
  DK182_RS00495 (DK181_00495) - 76760..77779 (-) 1020 WP_109833400.1 IS30 family transposase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 24561.19 Da        Isoelectric Point: 4.8066

>NTDB_id=293191 DK182_RS00490 WP_002962720.1 75954..76577(+) (comX) [Streptococcus sobrinus strain 10919]
MDKEKLKEIFNKHSALPEEVEEFDDGMVKEVITAGLLFCLKEVLDMDDSSFVSAFSRVEKTVSKLAKDYYIKLWTYDDWR
QEARIILYQLLERFPDLANDEEKLRIYFKTKFRSYVLDNIRKQESQKRAFDRMIYEEISELGHMIPSQQMDTADYCALKE
KLKELKQKLAPEDYAKILLLMRGGAFKGRSAFIKDIKVEFEDFDEDN

Nucleotide


Download         Length: 624 bp        

>NTDB_id=293191 DK182_RS00490 WP_002962720.1 75954..76577(+) (comX) [Streptococcus sobrinus strain 10919]
ATGGACAAAGAAAAACTCAAGGAAATTTTTAACAAACATTCTGCCTTACCAGAAGAAGTTGAAGAGTTTGATGATGGTAT
GGTCAAAGAAGTCATTACCGCTGGTTTATTATTTTGTTTGAAAGAGGTATTGGATATGGATGATTCTTCATTTGTAAGTG
CATTTAGCCGTGTTGAAAAAACTGTTAGCAAACTAGCCAAAGATTATTATATTAAATTATGGACCTATGATGACTGGAGG
CAGGAGGCACGAATTATCCTTTATCAGTTATTGGAGCGATTTCCAGATTTGGCCAATGATGAAGAAAAGTTACGAATCTA
TTTTAAAACAAAGTTCAGAAGTTATGTCCTTGATAATATTCGCAAGCAGGAAAGTCAAAAACGCGCTTTTGACAGGATGA
TTTACGAGGAAATTTCTGAATTAGGTCATATGATTCCTAGTCAGCAGATGGACACAGCTGATTATTGTGCCCTTAAGGAA
AAGCTAAAGGAACTTAAGCAGAAATTGGCTCCTGAGGATTATGCCAAAATTCTATTGCTGATGCGAGGTGGTGCATTCAA
AGGGAGAAGTGCCTTTATCAAGGATATTAAGGTTGAATTCGAAGATTTTGACGAGGACAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2IUC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Streptococcus sobrinus strain NIDR 6715-7

100

100

1

Multiple sequence alignment