Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   EQI56_RS10315 Genome accession   NZ_CP035165
Coordinates   2058541..2060316 (-) Length   591 a.a.
NCBI ID   WP_015714092.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103881     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2053541..2065316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI56_RS10295 (EQI56_10295) desE 2053914..2054972 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  EQI56_RS10300 (EQI56_10300) desK 2055092..2056204 (+) 1113 WP_014480016.1 two-component sensor histidine kinase DesK -
  EQI56_RS10305 (EQI56_10305) desR 2056223..2056822 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  EQI56_RS10310 (EQI56_10310) walN 2057430..2058293 (-) 864 WP_014480017.1 3D domain-containing protein -
  EQI56_RS10315 (EQI56_10315) recQ 2058541..2060316 (-) 1776 WP_015714092.1 DNA helicase RecQ Machinery gene
  EQI56_RS10330 (EQI56_10330) azoJ 2060881..2061507 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  EQI56_RS10335 (EQI56_10335) stpP 2061659..2062150 (-) 492 WP_014477068.1 TraR/DksA family transcriptional regulator -
  EQI56_RS10340 (EQI56_10340) - 2062225..2062557 (-) 333 WP_014480020.1 hypothetical protein -
  EQI56_RS10345 (EQI56_10345) - 2062635..2062862 (+) 228 WP_014480021.1 hypothetical protein -
  EQI56_RS10350 (EQI56_10350) yocM 2062849..2063325 (-) 477 WP_014477071.1 salt stress-responsive protein YocM -
  EQI56_RS10355 (EQI56_10355) - 2063392..2063655 (+) 264 WP_004399338.1 hypothetical protein -
  EQI56_RS10360 (EQI56_10360) - 2063660..2063893 (+) 234 WP_003231251.1 hypothetical protein -
  EQI56_RS10365 (EQI56_10365) yozO 2063987..2064331 (-) 345 WP_003220141.1 PH domain-containing protein -
  EQI56_RS10370 (EQI56_10370) yozC 2064687..2064890 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67386.80 Da        Isoelectric Point: 6.1778

>NTDB_id=293168 EQI56_RS10315 WP_015714092.1 2058541..2060316(-) (recQ) [Bacillus subtilis strain SRCM103881]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDERKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKESLKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=293168 EQI56_RS10315 WP_015714092.1 2058541..2060316(-) (recQ) [Bacillus subtilis strain SRCM103881]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAACTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACATGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAGGTCAGGGCAGGCCGGTATCATGGAGGTTTGGCTGATGA
TGAGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATTAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGCCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACCGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTACTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCAGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGCGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAATC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(21-182)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

RQC domain (RQC)

(403-508)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

HRDC domain (HRDC)

(518-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.492

100

0.995