Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   DK181_RS03330 Genome accession   NZ_CP029490
Coordinates   652641..653729 (+) Length   362 a.a.
NCBI ID   WP_002962604.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain SL1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 647641..658729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK181_RS03310 (DK182_03310) asnA 648921..649913 (+) 993 WP_028798371.1 aspartate--ammonia ligase -
  DK181_RS03315 (DK182_03315) - 650380..651459 (+) 1080 WP_002962595.1 MmcQ/YjbR family DNA-binding protein -
  DK181_RS03320 (DK182_03320) rsmD 651634..652173 (+) 540 WP_028798372.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  DK181_RS03325 (DK182_03325) coaD 652163..652654 (+) 492 WP_002962602.1 pantetheine-phosphate adenylyltransferase -
  DK181_RS03330 (DK182_03330) sepM 652641..653729 (+) 1089 WP_002962604.1 SepM family pheromone-processing serine protease Regulator
  DK181_RS03335 (DK182_03335) - 653931..654563 (+) 633 WP_002962606.1 YutD family protein -
  DK181_RS03340 (DK182_03340) rlmN 654565..655695 (+) 1131 WP_019770413.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  DK181_RS03345 (DK182_03345) - 655688..656218 (+) 531 WP_002962609.1 VanZ family protein -
  DK181_RS03350 (DK182_03350) - 656472..658214 (+) 1743 WP_002962611.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 39304.05 Da        Isoelectric Point: 9.9836

>NTDB_id=293156 DK181_RS03330 WP_002962604.1 652641..653729(+) (sepM) [Streptococcus sobrinus strain SL1]
MTTSKSSQAASKKGVWGFIKRIKWWLLGGFALLALLFCFLVPLPYYVEAPGGAYDIDQVMTVNGKTNKDKGSYNFVAVEV
RPGTVFNLAYSWLNPDTTQIVSKKELTGGTSTKDYELINQYYMENSQNTAIYQALKLAGKDAKLDYKGVYVLQVADNSSF
KGTLNIADTVTGINGKSFKSSKDLVKYVTGLKLDSQVTVQYTSQGKKKSADGKVVKLKNGKNGIGITLTDHTEVSSNDKV
KFSTQGVGGPSAGLMFTLSIYDQLNKDDLLKGRMIAGTGTIEPDGSVGDIGGVSQKVVSADKSGAEIFFVPDNPVAKADK
KYYPKGNNYQEAKKMAKKLGSKMKIVPVKTAQDAIDYLEKTK

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=293156 DK181_RS03330 WP_002962604.1 652641..653729(+) (sepM) [Streptococcus sobrinus strain SL1]
ATGACAACAAGTAAGTCAAGCCAGGCCGCCTCTAAAAAGGGAGTTTGGGGCTTTATCAAACGGATTAAATGGTGGCTTCT
GGGAGGTTTTGCCCTTCTGGCTCTGCTCTTTTGCTTTCTCGTTCCTCTGCCCTATTATGTTGAGGCTCCTGGCGGCGCCT
ATGATATCGATCAGGTCATGACCGTAAATGGCAAGACTAATAAGGACAAGGGTTCCTACAATTTTGTGGCAGTCGAAGTT
CGCCCAGGAACAGTCTTTAATCTGGCCTATTCCTGGCTCAATCCTGATACCACCCAGATTGTTTCCAAAAAAGAACTAAC
CGGTGGCACCAGCACCAAGGACTATGAGCTGATTAATCAGTACTACATGGAAAATTCCCAAAATACGGCTATTTATCAGG
CCCTCAAGCTGGCTGGTAAGGATGCCAAGTTGGATTACAAGGGGGTCTATGTGCTTCAGGTCGCTGATAATTCAAGCTTC
AAGGGGACTCTCAATATTGCGGATACGGTGACGGGAATTAATGGCAAGAGCTTCAAGTCTTCCAAGGACCTGGTCAAATA
TGTCACAGGCCTCAAGTTGGACTCTCAGGTGACCGTCCAATACACCAGCCAAGGTAAGAAAAAATCAGCTGATGGCAAGG
TGGTCAAGCTCAAGAATGGCAAGAATGGTATCGGCATTACTCTGACCGACCATACCGAAGTCAGCTCAAACGATAAGGTG
AAATTCTCCACCCAAGGCGTTGGCGGACCTAGTGCAGGACTTATGTTTACCCTGTCCATCTACGACCAGCTCAACAAAGA
TGACCTCCTCAAGGGACGGATGATTGCCGGAACAGGAACCATAGAGCCGGATGGTTCGGTTGGTGACATCGGCGGAGTTT
CGCAGAAGGTCGTTTCCGCTGATAAGTCAGGTGCCGAAATTTTCTTTGTTCCTGACAATCCCGTTGCCAAGGCAGACAAG
AAGTACTACCCCAAGGGGAACAACTACCAAGAAGCCAAAAAAATGGCCAAGAAGCTGGGCAGCAAGATGAAAATCGTTCC
CGTCAAGACGGCTCAAGATGCTATCGACTACCTAGAAAAAACCAAATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(248-314)

PDZ domain (PDZ_2)

(146-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

66.082

94.475

0.624

Multiple sequence alignment