Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SALB1_RS17035 Genome accession   NZ_CP029488
Coordinates   3807531..3808904 (-) Length   457 a.a.
NCBI ID   WP_109995516.1    Uniprot ID   -
Organism   Salinisphaera sp. LB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3802531..3813904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALB1_RS19630 rpsP 3803030..3803266 (-) 237 Protein_3386 30S ribosomal protein S16 -
  SALB1_RS17020 (SALB1_3462) ffh 3803388..3804785 (-) 1398 WP_109994930.1 signal recognition particle protein -
  SALB1_RS17025 (SALB1_3463) - 3805060..3805866 (+) 807 WP_109994931.1 inner membrane protein YpjD -
  SALB1_RS17030 (SALB1_3464) - 3805919..3807223 (+) 1305 WP_109994932.1 HlyC/CorC family transporter -
  SALB1_RS17035 (SALB1_3465) radA 3807531..3808904 (-) 1374 WP_109995516.1 DNA repair protein RadA Machinery gene
  SALB1_RS17040 (SALB1_3466) - 3809019..3809960 (+) 942 WP_109994933.1 alpha/beta hydrolase -
  SALB1_RS17045 (SALB1_3467) alr 3809961..3811025 (-) 1065 WP_109994934.1 alanine racemase -
  SALB1_RS17050 (SALB1_3468) dnaB 3811087..3812442 (-) 1356 WP_109994935.1 replicative DNA helicase -
  SALB1_RS17055 (SALB1_3469) rplI 3812554..3813159 (-) 606 WP_109994936.1 50S ribosomal protein L9 -
  SALB1_RS17060 (SALB1_3470) rpsR 3813172..3813402 (-) 231 WP_006914321.1 30S ribosomal protein S18 -
  SALB1_RS17065 (SALB1_3471) rpsF 3813415..3813786 (-) 372 WP_109994937.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48012.38 Da        Isoelectric Point: 8.0692

>NTDB_id=293133 SALB1_RS17035 WP_109995516.1 3807531..3808904(-) (radA) [Salinisphaera sp. LB1]
MAKSKTVFVCDQCGSTQPKWSGQCPDCGAWNTLTESVPAAPSRPGVAAPPVSFGDTTPQVQKLNAIKPRETPRTPTGLSE
LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVLAQLSADIPALYDTGEESLEQVQLRAQRLGVADADLSVLAETCVERVL
ALAKPQAPRLLVIDSIQTVFSQALSSAPGSVSQVRESASMLVRFAKATGTALIIVGHVTKEGTIAGPRVLEHMVDTVLYF
EAEASSRFRVIRAVKNRFGAVNELGVFAMSGAGLKQVTNPSAIFLSRHETAVPGSAVMVTREGSRPMLVEVQALVDGSQL
HNPRRVALGPDSQRLAMLLAVLHRHGGIALGDQDVFVNVVGGMRVTETAADLAVVLAALSSFRDKALGEKLIIFGEIGLA
GEIRPVPGGEDRLREAAKHGFTRAIVPKANAPRSRRVGDLEVVPVARLGEAIEAVVG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=293133 SALB1_RS17035 WP_109995516.1 3807531..3808904(-) (radA) [Salinisphaera sp. LB1]
ATGGCCAAGAGCAAAACTGTTTTCGTTTGCGATCAGTGCGGTTCGACCCAGCCCAAATGGTCGGGTCAGTGTCCGGATTG
CGGCGCCTGGAATACGCTTACCGAAAGCGTGCCCGCGGCGCCTTCGAGGCCTGGCGTGGCTGCGCCGCCGGTGTCGTTCG
GCGATACCACGCCGCAGGTACAGAAACTCAACGCGATCAAGCCGCGCGAGACCCCGCGCACGCCGACGGGGCTGTCCGAA
CTCGATCGCGTGCTCGGCGGCGGCCTGGTGCCGGGTTCGGTGATTCTGATCGGCGGCGATCCCGGCATCGGCAAGTCCAC
GCTGTTGCTCCAGGTGTTGGCCCAGCTGTCGGCCGATATCCCGGCGCTCTATGACACCGGCGAGGAGTCCCTCGAACAGG
TCCAGTTGCGTGCCCAGCGCCTTGGTGTGGCGGATGCGGACCTGTCGGTGCTGGCCGAGACCTGTGTCGAGCGCGTGCTG
GCGCTGGCCAAGCCGCAGGCGCCGCGCCTGTTGGTGATTGATTCGATCCAGACGGTGTTCTCCCAGGCCTTGTCGTCGGC
GCCGGGCAGCGTGTCGCAGGTGCGCGAGTCGGCCTCCATGCTGGTGCGTTTCGCCAAGGCCACCGGCACCGCGCTGATCA
TCGTCGGTCACGTGACCAAGGAAGGCACCATTGCCGGGCCGCGCGTGCTCGAGCACATGGTCGATACCGTGTTGTATTTC
GAGGCCGAGGCGTCGTCGCGTTTTCGTGTCATCCGGGCGGTGAAGAATCGCTTCGGTGCCGTCAACGAGCTCGGCGTGTT
CGCCATGTCCGGCGCCGGCCTGAAGCAGGTGACCAATCCCAGCGCGATCTTCCTGTCGCGCCACGAGACCGCCGTACCGG
GCAGCGCGGTGATGGTCACGCGTGAAGGTTCGCGGCCGATGCTGGTCGAGGTGCAGGCGCTGGTGGATGGCTCGCAGCTG
CACAACCCGCGCCGGGTGGCGCTCGGCCCCGATTCGCAGCGTCTGGCGATGCTGCTCGCGGTGCTGCATCGTCACGGCGG
CATCGCACTGGGCGATCAGGACGTGTTCGTCAACGTGGTCGGCGGCATGCGGGTGACCGAGACGGCGGCGGACCTCGCCG
TGGTGCTGGCGGCACTCTCGAGCTTTCGCGACAAGGCGCTCGGCGAAAAGCTGATCATCTTCGGCGAGATCGGCCTGGCC
GGCGAGATTCGGCCGGTTCCGGGCGGCGAAGATCGATTGCGTGAAGCCGCCAAACACGGGTTCACGCGCGCAATCGTGCC
CAAGGCCAATGCGCCGCGCTCGCGCCGCGTGGGCGATCTCGAGGTGGTCCCGGTCGCGCGGCTCGGCGAAGCCATCGAGG
CCGTGGTCGGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.351

100

0.499
  radA Streptococcus pneumoniae Rx1

47.033

99.562

0.468
  radA Streptococcus pneumoniae D39

47.033

99.562

0.468
  radA Streptococcus pneumoniae R6

47.033

99.562

0.468
  radA Streptococcus pneumoniae TIGR4

47.033

99.562

0.468
  radA Streptococcus mitis SK321

47.033

99.562

0.468
  radA Streptococcus mitis NCTC 12261

46.813

99.562

0.466

Multiple sequence alignment