Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ABU_RS03940 Genome accession   NC_009850
Coordinates   789608..791458 (-) Length   616 a.a.
NCBI ID   WP_012012529.1    Uniprot ID   -
Organism   Aliarcobacter butzleri RM4018     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 784608..796458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU_RS03925 (Abu_0784) - 785021..786148 (+) 1128 WP_012012526.1 iron-containing alcohol dehydrogenase -
  ABU_RS11880 - 786197..787297 (-) 1101 Protein_770 methyl-accepting chemotaxis protein -
  ABU_RS11885 - 787517..788458 (-) 942 Protein_771 Cache 3/Cache 2 fusion domain-containing protein -
  ABU_RS03935 (Abu_0786) - 788583..789605 (-) 1023 WP_012012528.1 alanine racemase -
  ABU_RS03940 (Abu_0787) uvrC 789608..791458 (-) 1851 WP_012012529.1 excinuclease ABC subunit UvrC Machinery gene
  ABU_RS03945 (Abu_0788) - 791614..794010 (+) 2397 WP_012012530.1 methyl-accepting chemotaxis protein -
  ABU_RS03950 (Abu_0789) - 794444..796447 (+) 2004 WP_012012531.1 HAMP domain-containing methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 72325.48 Da        Isoelectric Point: 8.9256

>NTDB_id=29313 ABU_RS03940 WP_012012529.1 789608..791458(-) (uvrC) [Aliarcobacter butzleri RM4018]
MNLQEKLQQLPNDAGVYQYFDKNGHLLYIGKAKILKNRVKSYFKFTPKLQPADKLSPRIYKMISEVESCEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFVDFDEDFPRLDITRRIQKSKSIKYFGPYSTGARDMLDSIYEIVPLVQKKSC
VKGKKACLFYQIQKCLAPCENKISKEEYAKIVENALEYIYNKTKLISKLNEKMLQYSNDFRFEEAMTLRDRIKTIEKSQI
KSDIDLATNEDIDIFAINANNKKAVIVRMFLRDGKLTSSSHDFLKIDNFDEEFEFDYQEAYERAIINYYDNEIPLLPKEI
LIAHELEITNELEEFLHTRFNKKIKLINPKKDKKREIVNIALNNCDELLRIENSKNQTSIYEELKELFNLQTLPYLIESF
DNSHMMGQATVGAMIVWNESLNTFDKKAFRHYNLESKDEYSQMKEMLIRRIESFEKNPAPDLWIIDGGETLLKLAFDIVQ
SVGVNLDIIAIAKEKIDAKAHRAKGKAKDIIHYKTKNGEFKSFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQ
ISLLQIKGIGEAKIKKLLLYFGEFEKIKKASFDELKTVLNEKDASTILDYFTNFKD

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=29313 ABU_RS03940 WP_012012529.1 789608..791458(-) (uvrC) [Aliarcobacter butzleri RM4018]
ATGAATTTACAAGAAAAGCTACAACAACTTCCTAATGATGCAGGAGTTTATCAATACTTTGACAAAAATGGTCATTTACT
TTATATAGGAAAAGCAAAGATTCTAAAAAATAGAGTTAAATCCTATTTTAAATTTACTCCAAAACTACAACCAGCAGATA
AATTAAGTCCAAGAATTTATAAAATGATTAGTGAAGTGGAAAGTTGCGAGTGGATTGTTGTACCAAATGAACATGATGCT
TTAATTCTTGAAAACTCTTTAATCAAACAATTAAAACCAAAATATAATATTTTACTTCGAGATGATAAAACTTATCCATA
CATTTTTGTAGATTTTGATGAAGATTTTCCAAGACTTGATATAACTAGAAGAATTCAAAAAAGTAAAAGTATCAAATATT
TTGGACCATACTCAACTGGTGCTAGAGATATGCTTGATTCTATTTATGAAATAGTTCCATTAGTACAAAAGAAATCTTGT
GTAAAGGGTAAAAAAGCCTGTTTATTTTATCAAATACAAAAATGTTTAGCGCCTTGTGAAAATAAAATCTCAAAAGAAGA
GTATGCAAAAATAGTTGAAAATGCTTTAGAGTACATATATAATAAAACAAAACTAATTTCAAAACTAAATGAAAAAATGC
TTCAATATTCAAATGATTTTAGGTTTGAAGAAGCAATGACTTTAAGAGATAGAATAAAAACTATTGAAAAATCTCAAATA
AAATCTGATATTGATTTAGCAACAAATGAAGATATTGATATTTTTGCAATAAATGCAAATAATAAAAAAGCTGTAATTGT
AAGAATGTTTTTAAGAGATGGAAAACTAACCTCATCAAGTCATGATTTTTTAAAAATAGATAACTTTGATGAAGAGTTCG
AATTTGATTATCAAGAAGCTTATGAAAGAGCAATTATTAACTACTATGATAATGAAATTCCTCTTTTACCAAAAGAGATT
TTGATTGCCCATGAACTTGAAATTACAAATGAATTAGAAGAGTTTTTACATACAAGATTTAACAAAAAGATTAAACTAAT
AAATCCTAAAAAAGATAAAAAAAGAGAGATTGTAAATATAGCTTTAAATAACTGTGATGAATTATTAAGAATTGAAAATT
CAAAAAATCAAACATCAATTTATGAAGAATTAAAAGAGTTGTTTAATCTTCAAACTCTTCCATATTTAATAGAGAGTTTT
GATAACTCTCATATGATGGGACAAGCAACAGTTGGAGCAATGATTGTTTGGAATGAAAGTTTAAATACTTTTGATAAAAA
AGCCTTTAGACATTATAATCTTGAATCAAAAGATGAATACTCTCAAATGAAAGAGATGTTAATAAGAAGAATTGAGAGTT
TTGAAAAAAATCCTGCTCCTGATTTATGGATAATAGATGGAGGAGAAACTTTACTAAAATTAGCTTTTGATATAGTGCAA
TCTGTTGGTGTAAATCTTGATATTATTGCAATAGCAAAAGAAAAAATTGATGCGAAAGCCCATAGAGCAAAAGGAAAAGC
AAAAGATATAATTCACTATAAAACAAAAAATGGTGAATTTAAAAGTTTTAACTTATTAACAAGTGATAAAAGACTACAAT
TCGTTCAAAGACAAAGGGATGAAGCTCATAGATTTGCAATAACTTTTCATAAAAAGCAAAAAAGAGCACAAGATAAACAA
ATCTCTTTATTACAAATCAAAGGTATTGGTGAAGCAAAAATCAAAAAGCTTCTTTTATATTTTGGAGAATTTGAAAAGAT
TAAAAAAGCATCATTTGATGAACTAAAAACTGTTTTAAACGAAAAAGATGCAAGTACAATTTTAGATTATTTTACTAATT
TCAAGGATTAA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-547)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

52.073

97.89

0.51

Multiple sequence alignment