Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CPZ25_RS18325 Genome accession   NZ_CP029487
Coordinates   3962204..3963565 (+) Length   453 a.a.
NCBI ID   WP_096918968.1    Uniprot ID   -
Organism   Eubacterium maltosivorans strain YI     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3957204..3968565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPZ25_RS18300 (CPZ25_018445) - 3957390..3958739 (+) 1350 WP_096918970.1 uroporphyrinogen decarboxylase family protein -
  CPZ25_RS18305 (CPZ25_018450) - 3958798..3959718 (+) 921 WP_083337035.1 GTP-binding protein -
  CPZ25_RS18310 (CPZ25_018455) - 3959728..3960369 (+) 642 WP_058695483.1 acetolactate decarboxylase -
  CPZ25_RS18315 (CPZ25_018460) - 3960590..3961639 (+) 1050 WP_074616609.1 PTS sugar transporter subunit IIC -
  CPZ25_RS18320 (CPZ25_018465) - 3961708..3962193 (+) 486 WP_096918969.1 VanZ family protein -
  CPZ25_RS18325 (CPZ25_018470) radA 3962204..3963565 (+) 1362 WP_096918968.1 DNA repair protein RadA Machinery gene
  CPZ25_RS18335 (CPZ25_018480) ruvA 3963967..3964578 (+) 612 WP_074616611.1 Holliday junction branch migration protein RuvA -
  CPZ25_RS18340 (CPZ25_018485) ruvB 3964589..3965626 (+) 1038 WP_058695478.1 Holliday junction branch migration DNA helicase RuvB -
  CPZ25_RS18345 (CPZ25_018490) queA 3965629..3966663 (+) 1035 WP_199678127.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CPZ25_RS18350 (CPZ25_018495) tgt 3966676..3967785 (+) 1110 WP_058695476.1 tRNA guanosine(34) transglycosylase Tgt -
  CPZ25_RS18355 (CPZ25_018500) yajC 3967805..3968251 (+) 447 WP_058695475.1 preprotein translocase subunit YajC -
  CPZ25_RS18360 (CPZ25_018505) scfA 3968278..3968418 (+) 141 WP_013381915.1 six-cysteine ranthipeptide SCIFF -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50427.69 Da        Isoelectric Point: 8.1362

>NTDB_id=293115 CPZ25_RS18325 WP_096918968.1 3962204..3963565(+) (radA) [Eubacterium maltosivorans strain YI]
MAKIKKKFVCQNCGYSTPKWMGRCTECGEWNSFVEELDMPTDQGKKNTLERAVYTKPKRIEEIIPQKEDRFKTKNKELDR
VLGGGIVPGGVILLGGDPGIGKSTILLQTTENLGSQGLKILYISGEESEQQLKMRAVRMNVKSQNIFFLSEINVPYIVDT
ILNEKPDLVIIDSIQTMYSPTITSAPGSVSQIRENANALMQIAKKDNISMILVGHVTKEGNIAGPRVLEHMVDTVLYFEG
EKYHTYRILRGVKNRFGSTNEIGIFEMAQDGLHEVANPSEMMLSSRPKNTCGSVVVPCMEGTRPLLIELQGLVSQTSFGN
PRRMATGMDYNRMVLLLAIMEKRLGLQLQNLDAYINVVGGMKIDEPALDLAVVSVLYSSFRNFEIPEDMMIIGEVGLTGE
VRNIQHIEKRLKEGAKLGFKRCIMPKGNARGLENTGLELLPVDNISKALNILK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=293115 CPZ25_RS18325 WP_096918968.1 3962204..3963565(+) (radA) [Eubacterium maltosivorans strain YI]
ATGGCGAAAATAAAAAAGAAGTTTGTATGCCAGAACTGTGGGTACAGCACCCCTAAATGGATGGGGCGCTGTACAGAATG
CGGCGAATGGAATTCCTTTGTGGAGGAGCTGGACATGCCCACCGATCAGGGAAAGAAAAATACCCTTGAACGGGCGGTAT
ACACAAAACCGAAGCGTATTGAGGAAATCATTCCTCAGAAAGAGGATCGTTTTAAAACGAAAAACAAGGAACTCGACCGT
GTCCTCGGCGGTGGTATCGTGCCCGGAGGCGTTATCCTCCTGGGCGGTGACCCTGGAATTGGAAAGTCGACGATCCTGTT
GCAGACGACGGAGAATCTTGGAAGCCAAGGGCTTAAAATCTTGTATATTTCGGGTGAAGAATCTGAGCAGCAGCTCAAAA
TGCGGGCAGTCCGGATGAATGTAAAATCCCAGAATATCTTTTTTCTGTCTGAGATTAACGTACCCTATATCGTGGATACT
ATTTTGAATGAGAAACCTGATCTTGTCATTATTGACTCGATACAGACAATGTACAGTCCTACGATTACCTCGGCTCCCGG
AAGCGTCAGCCAGATAAGGGAGAACGCCAACGCGTTGATGCAGATTGCCAAAAAAGATAATATTTCGATGATTCTGGTCG
GGCATGTGACCAAGGAAGGCAATATTGCTGGTCCACGTGTGTTAGAACACATGGTTGATACGGTTTTATATTTTGAGGGT
GAAAAGTACCATACCTACCGGATACTCAGAGGGGTCAAAAACCGTTTTGGCTCAACCAACGAGATCGGTATTTTCGAGAT
GGCGCAGGATGGCCTGCACGAGGTGGCAAATCCCTCTGAAATGATGTTGTCAAGCCGGCCGAAAAATACCTGCGGCTCAG
TGGTAGTGCCCTGCATGGAGGGAACGCGTCCGCTTTTAATCGAGCTTCAGGGGCTCGTATCTCAGACAAGCTTCGGTAAC
CCAAGGCGTATGGCCACCGGAATGGACTATAACCGTATGGTGCTGCTCCTGGCTATTATGGAAAAACGGCTGGGATTACA
GCTTCAGAATCTCGATGCTTATATCAATGTGGTCGGAGGTATGAAAATAGACGAACCGGCTCTCGATCTGGCCGTTGTGT
CTGTGCTGTACTCAAGCTTCAGAAATTTTGAGATTCCAGAGGATATGATGATTATCGGCGAGGTTGGCCTGACTGGTGAG
GTCAGAAATATACAGCACATTGAAAAGCGTCTTAAAGAGGGCGCAAAGCTTGGTTTCAAGCGTTGCATCATGCCAAAGGG
CAATGCCCGGGGCCTGGAGAATACAGGGCTTGAGCTGCTGCCGGTAGACAACATCTCCAAGGCTTTAAATATATTGAAGT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(62-220)

Subunit ChlI of Mg-chelatase (ChlI)

(355-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

55.752

99.779

0.556
  radA Streptococcus pneumoniae Rx1

52.546

95.364

0.501
  radA Streptococcus pneumoniae D39

52.546

95.364

0.501
  radA Streptococcus pneumoniae R6

52.546

95.364

0.501
  radA Streptococcus pneumoniae TIGR4

52.546

95.364

0.501
  radA Streptococcus mitis SK321

52.546

95.364

0.501
  radA Streptococcus mitis NCTC 12261

52.546

95.364

0.501

Multiple sequence alignment