Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   EQI56_RS02390 Genome accession   NZ_CP035165
Coordinates   467542..467976 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM103881     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 462542..472976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI56_RS02360 (EQI56_02360) ydaD 463191..464051 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  EQI56_RS02365 (EQI56_02365) lyxE 464067..464570 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  EQI56_RS02370 (EQI56_02370) ydaF 464658..465209 (+) 552 WP_041850710.1 GNAT family protein -
  EQI56_RS02375 (EQI56_02375) ydaG 465287..465709 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  EQI56_RS02380 (EQI56_02380) amj 466215..467024 (+) 810 WP_003234394.1 lipid II flippase Amj -
  EQI56_RS02385 (EQI56_02385) ydzA 467068..467358 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  EQI56_RS02390 (EQI56_02390) lrpC 467542..467976 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  EQI56_RS02395 (EQI56_02395) topB 468041..470224 (+) 2184 WP_003246684.1 DNA topoisomerase III -
  EQI56_RS02400 (EQI56_02400) ephJ 470427..471515 (+) 1089 WP_003246551.1 lipoprotein -
  EQI56_RS02405 (EQI56_02405) epsK 471496..472347 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=293111 EQI56_RS02390 WP_003246585.1 467542..467976(+) (lrpC) [Bacillus subtilis strain SRCM103881]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=293111 EQI56_RS02390 WP_003246585.1 467542..467976(+) (lrpC) [Bacillus subtilis strain SRCM103881]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1