Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DJ564_RS28325 Genome accession   NZ_CP029482
Coordinates   6000236..6001603 (-) Length   455 a.a.
NCBI ID   WP_109635008.1    Uniprot ID   A0A2U8U067
Organism   Pseudomonas sp. 31-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5995236..6006603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ564_RS28300 (DJ564_28300) - 5995373..5996062 (+) 690 WP_109635001.1 GntR family transcriptional regulator -
  DJ564_RS28305 (DJ564_28305) yjiA 5996166..5997134 (-) 969 WP_109635003.1 GTPase -
  DJ564_RS28310 (DJ564_28310) - 5997298..5997495 (-) 198 WP_008154232.1 YbdD/YjiX family protein -
  DJ564_RS28315 (DJ564_28315) - 5997510..5999576 (-) 2067 WP_109635005.1 carbon starvation CstA family protein -
  DJ564_RS28320 (DJ564_28320) - 5999735..6000103 (+) 369 WP_109635007.1 PilZ domain-containing protein -
  DJ564_RS28325 (DJ564_28325) radA 6000236..6001603 (-) 1368 WP_109635008.1 DNA repair protein RadA Machinery gene
  DJ564_RS28330 (DJ564_28330) - 6001649..6002191 (-) 543 WP_109635010.1 ankyrin repeat domain-containing protein -
  DJ564_RS28335 (DJ564_28335) katB 6002251..6003792 (-) 1542 WP_109635012.1 catalase KatB -
  DJ564_RS28340 (DJ564_28340) mscL 6004078..6004491 (+) 414 WP_010467482.1 large-conductance mechanosensitive channel protein MscL -
  DJ564_RS28345 (DJ564_28345) - 6004539..6005315 (-) 777 WP_109635014.1 ferredoxin--NADP reductase -
  DJ564_RS28350 (DJ564_28350) - 6005653..6006360 (+) 708 WP_109635016.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48770.29 Da        Isoelectric Point: 6.8987

>NTDB_id=293098 DJ564_RS28325 WP_109635008.1 6000236..6001603(-) (radA) [Pseudomonas sp. 31-12]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAPPSGRTGWTGQQAQIKTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKVMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=293098 DJ564_RS28325 WP_109635008.1 6000236..6001603(-) (radA) [Pseudomonas sp. 31-12]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCTCAACCTTCCCCAAGTGGGCCGGCCAGTGCGGCGAGTG
TGGGGCCTGGAACACGTTGACCGAAACCATGGTCGAGAGCGGCGGTGCCGCGCCACCCAGCGGTCGCACCGGCTGGACCG
GCCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAGATTCCGCGCTTCTCCACCGCGTCCAGCGAGCTC
GATCGAGTGTTGGGCGGTGGCCTGGTGGATGGTTCGGTGGTGCTGATCGGCGGTGATCCGGGCATCGGCAAGTCGACCAT
TCTCCTGCAAACCTTGTGCAACCTCGCCAAAGTCATGCCCGCGCTGTATGTCACCGGCGAAGAATCCCAGCAGCAAGTGG
CCATGCGCGCCCGCCGTCTCGGTTTGCCTCAGGACCAGCTGCGGGTGATGACTGAAACCTGCATCGAAACCATCATTGCC
ACCGCTCGGGTCGAAAAACCCAAGGTCATGGTGATCGACTCGATCCAGACGATCTTTACCGAACAGTTGCAATCGGCACC
GGGCGGCGTGTCGCAGGTCCGGGAAAGTGCGGCGTTGCTGGTGCGTTATGCCAAGCAGAGCGGCACCGCGATTTTCCTCG
TCGGCCACGTGACAAAAGAAGGCGCCTTGGCCGGACCGCGCGTGCTGGAGCACATGGTCGATACGGTGCTGTATTTCGAA
GGCGAATCCGATGGGCGCTTGCGATTGCTGCGTGCGGTGAAAAACCGTTTCGGTGCCGTCAACGAACTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCGTCAGCGATTTTTCTCACCCGTGCCCAGGAAGAAGTCCCGGGCA
GTGTGGTCATGGCGACGTGGGAAGGGACGCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATCTGGCG
AACCCGCGCCGGGTCACGCTGGGGCTGGATCAGAATCGCCTGGCGATGTTGCTGGCGGTGCTGCACCGTCACGGCGGGAT
TCCGACTCACGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTGAAGGTGCTGGAAACGGCCTCCGACCTGGCGTTGA
TGGCGGCGGTCATGTCCAGTTTGCGCAACCGCCCGCTGCCGCATGATTTGCTGGTGTTTGGCGAGGTTGGGCTGTCGGGC
GAAGTACGCCCGGTGCCGAGTGGCCAGGAACGCCTGAAGGAAGCGGCCAAGCACGGCTTCAAACGCGCCATCGTGCCCAA
GGGCAATGCGCCCAAGGAAGCGCCGCCGGGGTTGCAGATTATTGCCGTGACCCGCCTGGAACAGGCCCTCGATGCCCTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U8U067

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.488
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468

Multiple sequence alignment