Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DJ013_RS12220 Genome accession   NZ_CP029480
Coordinates   2989416..2990792 (+) Length   458 a.a.
NCBI ID   WP_111372090.1    Uniprot ID   -
Organism   Arcticibacterium luteifluviistationis strain SM1504T     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2984416..2995792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ013_RS12190 (DJ013_12190) - 2984508..2985707 (-) 1200 WP_162628160.1 hypothetical protein -
  DJ013_RS12195 (DJ013_12195) - 2985879..2986946 (+) 1068 WP_111372085.1 DUF4412 domain-containing protein -
  DJ013_RS12200 (DJ013_12200) aroQ 2986950..2987366 (-) 417 WP_111372086.1 type II 3-dehydroquinate dehydratase -
  DJ013_RS12210 (DJ013_12210) - 2987759..2988490 (-) 732 WP_162628161.1 hypothetical protein -
  DJ013_RS12215 (DJ013_12215) - 2988594..2989217 (-) 624 WP_111372089.1 porin family protein -
  DJ013_RS12220 (DJ013_12220) radA 2989416..2990792 (+) 1377 WP_111372090.1 DNA repair protein RadA Machinery gene
  DJ013_RS12225 (DJ013_12225) - 2990863..2991891 (+) 1029 WP_111372091.1 mechanosensitive ion channel family protein -
  DJ013_RS12230 (DJ013_12230) - 2991937..2993235 (-) 1299 WP_111372092.1 MFS transporter -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50628.92 Da        Isoelectric Point: 5.0829

>NTDB_id=293060 DJ013_RS12220 WP_111372090.1 2989416..2990792(+) (radA) [Arcticibacterium luteifluviistationis strain SM1504T]
MAKQKTAYFCQKCGYNSPKWLGKCPSCLEWNSLVEELITKDEPEKGNWRFGSQNAKPKSKPKKINDIHTTEQYRIITDDN
ELNRVLGGGLVPGSLTLIGGEPGIGKSTLMLQIALSLKDYNVLYISGEESEQQLKMRATRLKFENDRCYILTETATDSIF
KHIEMLEPDVVIVDSIQTMVSPLIESGAGSVSQIKECAAEFMTFAKESDVPVIMIGHITKEGSLAGPKVLEHMVDTVLQF
EGDRYMAYRILRTTKNRFGSTSELGIYEMQTDGLREVSNPSEILLSERASEISGISIASMMEGNRSLNIEIQSLVSTANY
GTPQRSSNGFDGRRLQMLLAVLEKRGGFRLGTQDVFLNVAGGLKVEDPAIDLAVCVSVASSYEDLAVSQSYCFAAEVGLG
GEIRAISRIEARISEAEKLGFKRIYISQNNMKGLDKAKFGIDIIASEKLEDVFRDLFG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=293060 DJ013_RS12220 WP_111372090.1 2989416..2990792(+) (radA) [Arcticibacterium luteifluviistationis strain SM1504T]
ATGGCAAAACAAAAAACTGCTTACTTCTGTCAAAAATGCGGTTATAACTCTCCAAAATGGCTAGGAAAATGTCCATCATG
TTTAGAGTGGAATTCCCTTGTAGAAGAATTAATTACAAAAGACGAACCAGAAAAAGGGAATTGGCGATTTGGAAGTCAAA
ATGCTAAACCAAAATCAAAGCCGAAGAAAATAAATGACATTCACACTACAGAGCAATATCGAATAATAACGGATGATAAT
GAGCTTAATAGAGTTCTAGGCGGTGGATTAGTGCCAGGTTCGCTTACGCTTATCGGAGGTGAGCCGGGGATAGGAAAATC
AACCCTTATGCTTCAGATAGCTCTCAGCCTTAAAGATTATAATGTGCTGTATATTTCTGGAGAAGAGAGCGAACAGCAGT
TAAAAATGAGAGCCACTAGGCTTAAATTTGAAAACGATAGATGCTATATTTTAACAGAAACAGCCACTGACTCTATATTT
AAACATATAGAGATGCTAGAACCTGATGTGGTGATAGTAGACTCTATCCAAACCATGGTTTCGCCACTGATAGAGTCTGG
AGCAGGTTCTGTATCTCAAATAAAAGAATGTGCTGCCGAGTTTATGACTTTTGCAAAAGAGTCTGACGTTCCTGTGATTA
TGATAGGCCACATTACCAAAGAAGGTAGTTTGGCAGGACCTAAAGTATTGGAGCACATGGTGGATACGGTATTGCAGTTT
GAAGGCGACCGTTACATGGCCTATAGAATTTTAAGAACTACCAAAAACAGATTTGGAAGCACTTCGGAATTGGGTATTTA
CGAAATGCAAACTGATGGGCTGAGGGAAGTTAGTAACCCTTCAGAAATACTTTTATCTGAAAGAGCAAGTGAAATTAGCG
GAATCAGTATAGCCTCTATGATGGAGGGAAACCGCTCTTTAAACATAGAAATCCAATCATTGGTAAGTACTGCCAATTAT
GGCACGCCGCAGCGTTCTAGTAATGGTTTTGACGGCAGAAGGCTTCAAATGCTATTGGCCGTTTTGGAAAAAAGAGGTGG
TTTTAGGTTAGGAACACAAGACGTTTTCTTGAATGTGGCTGGTGGATTGAAAGTTGAAGACCCCGCCATTGACCTAGCGG
TGTGCGTTAGCGTAGCTTCTTCTTATGAAGATTTGGCGGTGAGCCAGTCATACTGTTTTGCTGCTGAGGTAGGTTTAGGT
GGAGAAATACGAGCCATTAGCCGCATAGAAGCTAGAATATCAGAAGCCGAGAAATTAGGTTTCAAAAGAATCTACATTTC
GCAGAATAATATGAAAGGTCTTGATAAAGCTAAATTCGGAATTGACATAATAGCTTCAGAGAAACTTGAAGATGTTTTTC
GTGACCTTTTTGGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-430)

AAA domain (AAA_25)

(77-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.522

100

0.517
  radA Streptococcus mitis NCTC 12261

48.802

100

0.489
  radA Streptococcus pneumoniae Rx1

48.802

100

0.489
  radA Streptococcus pneumoniae D39

48.802

100

0.489
  radA Streptococcus pneumoniae R6

48.802

100

0.489
  radA Streptococcus pneumoniae TIGR4

48.802

100

0.489
  radA Streptococcus mitis SK321

48.584

100

0.487

Multiple sequence alignment