Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DKL58_RS08045 Genome accession   NZ_CP029477
Coordinates   1687142..1688947 (+) Length   601 a.a.
NCBI ID   WP_109586743.1    Uniprot ID   -
Organism   Lactobacillus kullabergensis strain ESL0186     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1682142..1693947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKL58_RS08020 (DKL58_08020) - 1682493..1682969 (-) 477 WP_045928612.1 threonine/serine exporter family protein -
  DKL58_RS08025 (DKL58_08025) - 1682973..1683749 (-) 777 WP_109586740.1 threonine/serine exporter family protein -
  DKL58_RS08030 (DKL58_08030) - 1683758..1685305 (-) 1548 WP_109586741.1 ABC-F family ATP-binding cassette domain-containing protein -
  DKL58_RS08035 (DKL58_08035) - 1685407..1685781 (-) 375 WP_045928615.1 hypothetical protein -
  DKL58_RS08040 (DKL58_08040) - 1685810..1686994 (-) 1185 WP_109586742.1 LCP family protein -
  DKL58_RS08045 (DKL58_08045) pepF 1687142..1688947 (+) 1806 WP_109586743.1 oligoendopeptidase F Regulator
  DKL58_RS08050 (DKL58_08050) - 1689074..1690216 (-) 1143 WP_109586744.1 ArgE/DapE family deacylase -
  DKL58_RS08055 (DKL58_08055) - 1690231..1690980 (-) 750 WP_109586745.1 amino acid ABC transporter ATP-binding protein -
  DKL58_RS08060 (DKL58_08060) - 1690973..1692469 (-) 1497 WP_109586746.1 ABC transporter substrate-binding protein/permease -
  DKL58_RS08065 (DKL58_08065) - 1692638..1693867 (-) 1230 WP_109586747.1 lactate oxidase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68201.02 Da        Isoelectric Point: 4.6361

>NTDB_id=293050 DKL58_RS08045 WP_109586743.1 1687142..1688947(+) (pepF) [Lactobacillus kullabergensis strain ESL0186]
MSIPKRNEVPENLKWDLTRIFKTDNDWEDEYTLVKKEIPVLSTLKENFTTSGASLYNGITQILTVSRRLEKVYSYATLAS
DVDTGNAHYLSYVAQVQGLASQFEAATSFMNPAILSLSAEKLSALEREEPKLGNYKHLLDQITRLRPYTLSAQEEKLIAD
AGDALSASENTYNVLTNSDMEYGYTQDDNGEMVQLSDGLYSLLIQSQNREVRKNAFASMYATYGQFENSLAATLSGAVKE
HNYSARVHHYPSARESAMNANGVPLVVYDTLIDEVDEHLDLLHEYVALRKQILGLKDLQMWDMYVPLTGKPALSYTFEQA
KAEAKKALAPLGEDYLKQVDYIFNNRVIDVVESQNKATGAYSGGCYDTDAYELLNWEDNVDSLYTLVHETGHSVHSMYTR
QNQPYVYGDYPIFVAEIASTTNENILTEYFLNHISDPKTRAFVLNYYLDSFKGTLFRQTQFAEFEQQIHEMDATGEPLTA
DRLDDIYGKINQRYYGDAVESGGEIAKEWARVPHFYYNFYVYQYATGFAAATALANNVVHGSTEQRNAYLNFLKAGSSDY
PAEIMKKAGVDMTKPDYLEEAFKTFANRLSEFRKIIQNNYN

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=293050 DKL58_RS08045 WP_109586743.1 1687142..1688947(+) (pepF) [Lactobacillus kullabergensis strain ESL0186]
ATGTCAATTCCTAAACGTAATGAAGTCCCAGAAAATCTCAAATGGGATTTAACCAGGATATTTAAAACTGATAATGACTG
GGAAGATGAATATACACTTGTCAAAAAAGAAATACCAGTTTTAAGCACTTTAAAAGAAAATTTTACCACTTCTGGTGCAT
CTTTATATAATGGTATTACTCAAATTTTAACAGTTAGTCGGAGACTGGAAAAAGTCTATTCTTATGCTACTCTTGCCAGT
GATGTTGATACTGGAAATGCCCATTATTTGAGTTATGTAGCTCAAGTGCAAGGACTTGCAAGCCAGTTTGAAGCCGCTAC
TTCTTTTATGAATCCAGCAATTTTAAGTCTTTCAGCGGAAAAGTTGAGTGCTTTAGAACGAGAAGAGCCTAAACTCGGTA
ACTACAAGCATTTGCTTGATCAAATTACGAGGCTGAGACCATATACACTATCTGCACAAGAAGAAAAGCTAATTGCAGAT
GCTGGTGATGCTTTATCTGCTTCAGAAAACACTTATAACGTTTTAACCAATTCAGATATGGAATACGGTTATACTCAGGA
TGATAACGGTGAAATGGTTCAACTTTCCGATGGCTTATACTCATTGCTTATTCAATCCCAAAATCGTGAAGTACGTAAAA
ATGCTTTTGCTTCCATGTACGCTACTTACGGCCAATTTGAAAATTCCCTGGCAGCAACTCTTTCCGGTGCTGTCAAGGAG
CATAACTATAGTGCCCGTGTTCATCATTATCCATCAGCTCGTGAGAGTGCAATGAATGCAAATGGCGTACCATTAGTCGT
TTACGATACTTTGATTGATGAAGTCGATGAACACTTAGACCTATTGCATGAATATGTAGCGTTACGCAAACAGATTTTAG
GCTTAAAGGATCTGCAAATGTGGGACATGTATGTTCCATTAACTGGTAAACCAGCATTGAGCTATACTTTTGAGCAAGCT
AAAGCAGAAGCCAAAAAGGCATTAGCACCATTAGGAGAGGACTATTTAAAGCAGGTCGACTATATTTTTAATAATCGCGT
AATTGACGTGGTTGAATCACAGAATAAAGCTACCGGAGCATATTCTGGCGGCTGCTATGATACAGATGCATATGAATTGC
TCAATTGGGAGGACAATGTTGATTCATTATACACACTAGTTCATGAAACAGGTCACTCTGTCCACAGCATGTATACTAGG
CAAAATCAGCCGTATGTTTATGGTGATTATCCTATCTTTGTTGCTGAAATAGCTTCTACAACTAATGAAAATATCCTGAC
AGAGTACTTTTTAAATCACATTTCGGATCCTAAAACGCGTGCCTTTGTCCTTAATTACTACCTGGATTCTTTCAAAGGAA
CCTTGTTTAGGCAAACGCAGTTTGCTGAATTTGAACAGCAAATTCACGAAATGGATGCAACTGGTGAACCATTAACGGCT
GATCGTTTAGATGATATCTACGGTAAAATTAATCAGCGCTATTACGGTGATGCAGTAGAATCTGGTGGAGAAATTGCTAA
AGAATGGGCCAGAGTACCTCATTTTTATTACAACTTCTATGTTTATCAATACGCTACAGGTTTTGCCGCAGCCACTGCCT
TAGCAAACAATGTCGTTCATGGATCTACCGAGCAACGAAATGCCTATTTGAACTTTCTAAAAGCTGGCTCTAGTGATTAT
CCTGCTGAAATCATGAAAAAAGCTGGAGTTGATATGACGAAGCCTGATTATTTAGAAGAAGCTTTTAAAACTTTTGCCAA
TCGTTTAAGCGAATTTAGGAAAATTATCCAAAATAATTATAATTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.986

98.502

0.483

Multiple sequence alignment