Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DKL58_RS06785 Genome accession   NZ_CP029477
Coordinates   1423884..1425260 (-) Length   458 a.a.
NCBI ID   WP_109586565.1    Uniprot ID   -
Organism   Lactobacillus kullabergensis strain ESL0186     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1418884..1430260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKL58_RS06765 (DKL58_06765) rlmB 1419532..1420287 (-) 756 WP_109586562.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DKL58_RS06770 (DKL58_06770) - 1420274..1420699 (-) 426 WP_222711221.1 Mini-ribonuclease 3 -
  DKL58_RS06775 (DKL58_06775) cysS 1420710..1422134 (-) 1425 WP_109586563.1 cysteine--tRNA ligase -
  DKL58_RS06780 (DKL58_06780) gltX 1422310..1423809 (-) 1500 WP_109586564.1 glutamate--tRNA ligase -
  DKL58_RS06785 (DKL58_06785) radA 1423884..1425260 (-) 1377 WP_109586565.1 DNA repair protein RadA Machinery gene
  DKL58_RS06790 (DKL58_06790) - 1425261..1425812 (-) 552 WP_109586566.1 dUTP diphosphatase -
  DKL58_RS06795 (DKL58_06795) - 1425921..1426235 (+) 315 WP_109586567.1 hypothetical protein -
  DKL58_RS06800 (DKL58_06800) pepC 1426364..1427710 (+) 1347 WP_109586568.1 aminopeptidase C -
  DKL58_RS06805 (DKL58_06805) - 1427810..1428409 (-) 600 WP_109586569.1 ATP-binding cassette domain-containing protein -
  DKL58_RS06810 (DKL58_06810) - 1428419..1429003 (-) 585 WP_109586570.1 hypothetical protein -
  DKL58_RS06815 (DKL58_06815) - 1429006..1429830 (-) 825 WP_109586571.1 hypothetical protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50124.90 Da        Isoelectric Point: 7.0276

>NTDB_id=293048 DKL58_RS06785 WP_109586565.1 1423884..1425260(-) (radA) [Lactobacillus kullabergensis strain ESL0186]
MAKLKTKYKCRSCGYISASYLGRCPNCGAWNQFEKETEAVQNRSTKGSPSRLIKKTGISEPVKLENVKAEKEERVQTSME
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSELANQYKVLYVSGEESANQIKLRADRLGLTANDMMLYPETDMEDI
RQQISELEPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITIFVIGHVTKEGAIAGPKILEHMVDTVLY
FEGDEHHAYRILHSVKNRFGAANEIGMFEMVDKGLKEVTNPSAVFLDERLPKSTGSAIVVSLEGTRPILAEIQALVTPTA
FGYAKRTTAGIDYNRAGLLLAVLEKRGNLMLQNQDVYLTATGGIRLNEPAVDLAVVMAIASSYKNQEILPTDCFVGEVGL
TGEVRRVNQIDARIKEAAKTGFKRIFIPKHNMRASLKNAGIEVVPVSSIPQTLKLVLG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=293048 DKL58_RS06785 WP_109586565.1 1423884..1425260(-) (radA) [Lactobacillus kullabergensis strain ESL0186]
ATGGCAAAACTAAAAACAAAGTATAAATGTCGTTCTTGTGGTTACATTTCTGCTAGTTATTTAGGGCGCTGTCCCAATTG
CGGCGCTTGGAATCAGTTTGAAAAAGAAACTGAAGCAGTGCAAAACCGTTCAACTAAAGGCAGTCCCAGCAGGCTTATCA
AGAAAACTGGAATTAGTGAACCGGTTAAATTGGAAAATGTTAAGGCAGAAAAAGAAGAACGTGTACAAACCAGTATGGAA
GAGCTCAACAGAGTTTTAGGCGGAGGTATTGTTCCAGGTTCATTAGTTTTGATTGGCGGCGACCCTGGCATTGGCAAGTC
AACTTTAATGTTGCAAATTATGAGCGAACTTGCAAATCAATATAAAGTGCTGTATGTTTCGGGGGAAGAATCAGCCAATC
AGATTAAGCTACGGGCTGACCGTTTAGGACTGACAGCTAATGATATGATGCTTTATCCTGAAACAGACATGGAAGACATT
CGCCAACAAATTTCCGAGCTAGAGCCCGATTTTGTTGTCATTGACTCAATTCAGACAATGAATGAACCAAGCTTAGATTC
AATGACGGGATCAGCTTCACAGGTAAGAGAAGTTACTAGTGAACTAATGAAGATTGCCAAAATGGATGCTATTACCATTT
TTGTTATTGGCCATGTTACAAAAGAAGGCGCGATTGCCGGTCCTAAAATCCTAGAGCACATGGTAGATACCGTTCTTTAT
TTTGAGGGTGATGAACACCATGCCTACCGTATTTTACATTCTGTGAAAAACAGATTTGGTGCTGCTAATGAAATAGGCAT
GTTTGAAATGGTTGATAAAGGTTTAAAAGAAGTTACTAATCCTTCAGCTGTATTTTTAGATGAACGTTTACCAAAATCTA
CCGGTTCTGCAATTGTGGTTTCTTTAGAAGGAACGCGTCCTATTTTGGCGGAAATACAGGCATTAGTCACACCAACAGCA
TTTGGCTATGCTAAGAGAACCACGGCAGGTATAGATTATAATCGAGCTGGACTTCTTTTAGCAGTTTTAGAAAAACGGGG
CAACTTGATGTTGCAAAATCAGGATGTATATTTAACTGCTACTGGTGGAATTCGCTTGAACGAACCGGCAGTTGACTTAG
CCGTCGTCATGGCTATCGCATCAAGTTATAAAAATCAGGAAATTTTGCCAACTGATTGTTTTGTTGGTGAAGTTGGTTTA
ACCGGTGAGGTCAGACGCGTCAACCAAATAGATGCGCGAATTAAAGAAGCTGCTAAAACTGGGTTTAAGCGTATTTTTAT
CCCGAAACACAATATGCGCGCAAGTCTAAAGAACGCTGGAATTGAAGTTGTCCCCGTTTCAAGTATTCCGCAAACCTTAA
AACTAGTTTTAGGCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-223)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

58.515

100

0.585
  radA Streptococcus pneumoniae D39

58.515

100

0.585
  radA Streptococcus pneumoniae R6

58.515

100

0.585
  radA Streptococcus pneumoniae TIGR4

58.515

100

0.585
  radA Streptococcus mitis NCTC 12261

58.515

100

0.585
  radA Streptococcus mitis SK321

58.515

100

0.585
  radA Bacillus subtilis subsp. subtilis str. 168

56.399

100

0.568

Multiple sequence alignment