Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   EQI48_RS13150 Genome accession   NZ_CP035164
Coordinates   2527609..2528736 (+) Length   375 a.a.
NCBI ID   WP_029727091.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM104005     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2522609..2533736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI48_RS13120 (EQI48_13120) arsK 2523211..2523651 (-) 441 WP_128471809.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  EQI48_RS13125 (EQI48_13125) arsR 2523710..2524027 (-) 318 WP_128471810.1 arsenical resistance operon transcriptional regulator ArsR -
  EQI48_RS13130 (EQI48_13130) - 2524398..2524655 (-) 258 Protein_2520 YqcI/YcgG family protein -
  EQI48_RS13135 (EQI48_13135) - 2524953..2525546 (-) 594 WP_128471811.1 TetR/AcrR family transcriptional regulator -
  EQI48_RS13140 (EQI48_13140) - 2525705..2526700 (+) 996 WP_128471812.1 acryloyl-CoA reductase -
  EQI48_RS13145 (EQI48_13145) - 2526982..2527112 (+) 131 Protein_2523 DUF255 domain-containing protein -
  EQI48_RS13150 (EQI48_13150) rapC 2527609..2528736 (+) 1128 WP_029727091.1 response regulator aspartate phosphatase RapE Regulator
  EQI48_RS13155 (EQI48_13155) phrE 2528726..2528860 (+) 135 WP_014114495.1 phosphatase RapE inhibitor PhrE -
  EQI48_RS13160 (EQI48_13160) - 2529266..2530333 (-) 1068 WP_128471813.1 isocitrate/isopropylmalate dehydrogenase family protein -
  EQI48_RS13165 (EQI48_13165) - 2530423..2531091 (-) 669 WP_128471814.1 aspartate/glutamate racemase family protein -
  EQI48_RS13170 (EQI48_13170) - 2531481..2532353 (-) 873 WP_128471815.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44622.44 Da        Isoelectric Point: 7.5547

>NTDB_id=293038 EQI48_RS13150 WP_029727091.1 2527609..2528736(+) (rapC) [Bacillus subtilis strain SRCM104005]
MISITSAEVGMKINEWHRHIQKFNVTDAEMLKAEIERDIEVMEEDQDLLIYYQLMAFRHKIMLEYTLPSDENRMELSEYL
KKIEGHKKKLDNMRAYYYNFFRGMYEFRNGEYTKAITYYKKAERKIPTISDKIEKAEFYFKLSEVYYHMKMTHISMHYAE
LSYNIYKKHELYSVRRIQCHFVIAGNYDDLENHEKALPHLQEALKGAELLKSKNTHIYATAFFNLGNCYHKMDNLNKAAR
YIEQALVQYRKINSDVLPQAYHDLALIYFKQGKKEQAMDCFRKGIRSAVDFKDELFMNLFEALDVLYIRNGDTPKLLNIF
SRLENGKGYPYLEELALLGGNLFDYNGKIEDSIICFKKMVYAQKQISKGECMYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=293038 EQI48_RS13150 WP_029727091.1 2527609..2528736(+) (rapC) [Bacillus subtilis strain SRCM104005]
TTGATATCAATCACATCAGCTGAAGTGGGAATGAAGATTAATGAATGGCATAGGCATATTCAAAAATTCAACGTTACTGA
TGCTGAAATGTTAAAAGCTGAAATAGAACGTGATATAGAGGTTATGGAAGAAGATCAAGATTTGCTTATTTATTATCAAT
TGATGGCCTTTCGCCATAAGATCATGTTGGAATACACGCTGCCATCTGATGAAAACCGAATGGAACTTTCAGAATATTTA
AAGAAAATCGAAGGCCATAAGAAAAAACTAGACAATATGCGGGCATATTATTATAACTTCTTCCGCGGGATGTATGAGTT
TAGAAACGGTGAATACACAAAGGCCATTACATATTACAAAAAAGCTGAACGCAAAATTCCAACGATCTCCGACAAGATTG
AAAAAGCAGAGTTTTATTTTAAGTTATCGGAAGTCTATTATCATATGAAAATGACACATATCTCAATGCACTATGCTGAA
CTTTCATACAACATCTATAAAAAACATGAACTTTATTCTGTTCGGCGTATACAGTGCCATTTTGTCATAGCCGGTAACTA
CGATGACCTTGAAAACCATGAAAAAGCTCTCCCCCACCTTCAAGAAGCTTTAAAAGGTGCTGAGCTGCTTAAAAGTAAAA
ATACTCACATCTATGCCACCGCATTTTTCAATCTCGGTAACTGCTATCACAAAATGGACAACTTAAATAAGGCTGCTCGT
TACATCGAACAAGCTTTGGTTCAATACAGAAAAATAAACTCTGACGTACTTCCGCAAGCTTATCATGACCTAGCGTTGAT
TTATTTTAAACAAGGCAAAAAAGAACAAGCAATGGATTGCTTCCGCAAAGGAATCAGAAGTGCTGTAGATTTTAAAGACG
AACTTTTTATGAACTTATTTGAAGCATTAGACGTTCTTTATATAAGAAATGGCGATACACCTAAACTCCTCAACATTTTC
TCTCGTTTAGAGAATGGCAAAGGATACCCTTATCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGG
AAAAATAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTCAAAAGCAAATATCGAAAGGGGAATGCATGTATG
AAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-64)

Tetratricopeptide repeat (TPR_8)

(259-286)

Tetratricopeptide repeat (TPR_12)

(184-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.897

100

0.413
  rapF Bacillus subtilis subsp. subtilis str. 168

38.196

100

0.384