Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DKL56_RS06905 Genome accession   NZ_CP029476
Coordinates   1447823..1449628 (+) Length   601 a.a.
NCBI ID   WP_109715871.1    Uniprot ID   -
Organism   Lactobacillus apis strain ESL0185     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1442823..1454628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKL56_RS06880 (DKL56_06880) - 1442833..1443309 (-) 477 WP_046307789.1 threonine/serine exporter family protein -
  DKL56_RS06885 (DKL56_06885) - 1443312..1444088 (-) 777 WP_109715868.1 threonine/serine exporter family protein -
  DKL56_RS06890 (DKL56_06890) - 1444099..1445646 (-) 1548 WP_046307793.1 ABC-F family ATP-binding cassette domain-containing protein -
  DKL56_RS06895 (DKL56_06895) - 1446065..1446424 (-) 360 WP_109715869.1 hypothetical protein -
  DKL56_RS06900 (DKL56_06900) - 1446470..1447678 (-) 1209 WP_109715870.1 LCP family protein -
  DKL56_RS06905 (DKL56_06905) pepF 1447823..1449628 (+) 1806 WP_109715871.1 oligoendopeptidase F Regulator
  DKL56_RS06910 (DKL56_06910) - 1449670..1450812 (-) 1143 WP_074425875.1 ArgE/DapE family deacylase -
  DKL56_RS06915 (DKL56_06915) - 1450827..1451576 (-) 750 WP_046307802.1 amino acid ABC transporter ATP-binding protein -
  DKL56_RS06920 (DKL56_06920) - 1451569..1453065 (-) 1497 WP_109715872.1 ABC transporter substrate-binding protein/permease -
  DKL56_RS06925 (DKL56_06925) - 1453241..1454470 (-) 1230 WP_074425877.1 lactate oxidase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68856.63 Da        Isoelectric Point: 4.4103

>NTDB_id=293032 DKL56_RS06905 WP_109715871.1 1447823..1449628(+) (pepF) [Lactobacillus apis strain ESL0185]
MAIPKRTEVPEELKWDLTRVFSSDNDWEQEYTLIKKEVQDLSKLKKDFTKDGHHLYDDLTKILEVGRRLEKVYVYATMSS
DVDSSDSHYLGYVAQAQTLVSQFEAATSFMNPSILELSQAELKQFMEDEPKLNNYAHMLEQIMQQKPHTLSAQEEKIIAD
AGDALGTSENTFNVLTNSDMEYGYVETDDGEMVQLSDGLYSNLIQSQNREVRKNAFDVMYATYGQFENSLASTLSGVVKQ
HNYLARVHNYDSARSSALAENHVPTVVYDTLISEVDSHLDLLHDYVALRKQILGLDDLQMWDLYVPLTGTPSLSYTFEQA
KAEAKKALAPLGEDYLKQVDYIFNNRVIDVVESQNKVTGAYSGGSYDTDAYELLNWENNIDSLYTLVHETGHSVHSMYTR
QTQPYVYGDYPIFVAEIASTTNENILTEYFLDHITDSKTRAFVLNYYLDSFKGTLFRQTQFAEFEQYIHDLDAKGEPLTA
DMLDDFYGDLNQRYYGDAVEPGSEIAKEWARIPHFYYNFYVYQYATGFAAATALANNVVHGTLEQREAYINFLKSGSSDY
PVEIMKKAGVDMTKPDYLEEAFETFKKRLAEFKDIIKNDFK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=293032 DKL56_RS06905 WP_109715871.1 1447823..1449628(+) (pepF) [Lactobacillus apis strain ESL0185]
ATGGCTATACCTAAAAGAACAGAAGTCCCAGAAGAACTTAAATGGGACTTAACAAGAGTATTTAGTTCAGATAATGACTG
GGAACAAGAATATACTCTTATCAAAAAAGAAGTGCAAGACTTAAGCAAACTTAAGAAAGATTTTACTAAGGATGGTCATC
ATCTGTACGATGACTTAACCAAAATTTTAGAAGTTGGTCGCCGTTTAGAAAAAGTCTATGTTTATGCAACAATGTCCAGT
GACGTTGACTCAAGCGACTCACACTATCTTGGCTATGTAGCACAAGCCCAAACCTTAGTAAGCCAATTTGAAGCAGCAAC
TTCCTTTATGAACCCTTCAATTTTAGAGCTCTCGCAAGCAGAGTTAAAACAGTTTATGGAAGATGAGCCCAAGCTAAACA
ATTACGCTCATATGCTTGAACAAATTATGCAGCAAAAGCCGCATACTCTTTCGGCACAGGAAGAAAAAATAATTGCTGAT
GCTGGGGATGCCCTTGGCACTTCAGAAAACACCTTCAACGTTTTGACAAATTCAGATATGGAATATGGTTACGTTGAAAC
AGATGATGGCGAAATGGTTCAGCTGTCAGACGGACTTTATTCCAACCTCATTCAATCGCAAAACCGTGAAGTGCGTAAAA
ATGCCTTTGATGTAATGTATGCTACCTATGGCCAATTTGAAAATTCACTTGCTTCAACTCTTTCAGGAGTTGTTAAACAG
CATAATTACTTGGCTCGAGTTCATAATTATGACTCTGCACGCAGCTCAGCTTTAGCAGAAAATCACGTACCTACTGTTGT
CTATGATACTTTGATTAGTGAAGTTGACAGTCACCTTGATTTACTTCATGACTACGTTGCTTTGCGCAAACAAATTCTTG
GACTTGATGATCTGCAAATGTGGGACTTGTATGTTCCACTAACTGGAACACCGTCATTGTCATATACTTTTGAGCAGGCA
AAAGCAGAGGCTAAAAAAGCCCTAGCTCCATTAGGAGAAGATTACTTAAAGCAAGTTGATTATATTTTTAATAACCGTGT
AATTGACGTCGTTGAATCACAAAATAAAGTTACTGGTGCTTATTCTGGTGGCTCTTATGATACAGATGCTTATGAGCTTT
TGAACTGGGAAAATAATATCGATTCACTTTACACCCTTGTTCATGAAACTGGCCACTCTGTCCACAGTATGTACACACGT
CAAACTCAACCTTATGTTTATGGCGATTATCCTATTTTTGTGGCTGAAATTGCATCAACTACCAACGAAAATATTTTAAC
CGAGTACTTTTTAGATCATATTACGGATTCAAAAACACGTGCTTTTGTGCTTAACTACTACCTTGATTCGTTTAAGGGAA
CACTATTTAGACAAACTCAATTCGCTGAATTTGAGCAGTACATTCATGATTTAGACGCCAAAGGTGAGCCATTAACTGCA
GACATGCTTGACGACTTCTACGGTGACTTAAACCAGCGTTACTATGGCGATGCGGTTGAACCAGGAAGTGAAATTGCTAA
AGAGTGGGCAAGAATTCCACACTTCTATTACAATTTCTACGTTTACCAATATGCAACTGGCTTTGCAGCAGCAACTGCAC
TAGCCAATAATGTTGTGCACGGCACATTAGAACAAAGAGAAGCTTATATTAACTTCTTAAAATCAGGTTCAAGTGATTAC
CCAGTCGAAATCATGAAGAAAGCCGGAGTTGATATGACTAAACCAGATTATCTGGAAGAAGCCTTTGAAACCTTTAAAAA
GCGCCTAGCCGAATTTAAAGACATCATCAAAAATGATTTTAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(114-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.751

99.667

0.506

Multiple sequence alignment