Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   B7L90_RS02180 Genome accession   NZ_CP029473
Coordinates   560297..560581 (-) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain Hx05     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 555297..565581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L90_RS02160 (B7L90_06285) ade 555400..557133 (-) 1734 WP_025851460.1 adenine deaminase -
  B7L90_RS02165 (B7L90_06280) ktrC 557282..557947 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  B7L90_RS02170 (B7L90_06275) - 557988..558815 (-) 828 WP_025851463.1 gamma-glutamylcyclotransferase family protein -
  B7L90_RS02175 (B7L90_06270) - 558817..560124 (-) 1308 WP_119891434.1 ATP-binding protein -
  B7L90_RS02180 (B7L90_06265) abrB 560297..560581 (-) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  B7L90_RS02190 (B7L90_06255) mreBH 560850..561857 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  B7L90_RS02195 (B7L90_06250) - 561929..562063 (+) 135 WP_003154559.1 protein YkpC -
  B7L90_RS02200 (B7L90_06245) - 562164..563396 (+) 1233 WP_025851469.1 aminopeptidase -
  B7L90_RS02205 (B7L90_06240) - 563426..564334 (-) 909 WP_025851471.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=292904 B7L90_RS02180 WP_024085249.1 560297..560581(-) (abrB) [Bacillus velezensis strain Hx05]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=292904 B7L90_RS02180 WP_024085249.1 560297..560581(-) (abrB) [Bacillus velezensis strain Hx05]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGTAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment