Detailed information NTG0029289

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PLES_RS07330
• Genome accession: NC_011770
• Coordinates: 1521391..1522395 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa LESB58
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1516391..1527395

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PLES_RS07300 (PLES_14071)	fghA	1516483..1517334 (+)	852	WP_012613727.1	S-formylglutathione hydrolase	-
PLES_RS07305 (PLES_14081)	ispF	1517405..1517878 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PLES_RS07310 (PLES_14091)	truD	1517875..1518942 (+)	1068	WP_012613728.1	tRNA pseudouridine(13) synthase TruD	-
PLES_RS07315 (PLES_14101)	surE	1518930..1519679 (+)	750	WP_012613729.1	5'/3'-nucleotidase SurE	-
PLES_RS07320 (PLES_14111)	-	1519712..1520347 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PLES_RS07325 (PLES_14121)	-	1520393..1521286 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PLES_RS07330 (PLES_14131)	rpoS	1521391..1522395 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PLES_RS07335 (PLES_14141)	fdxA	1522822..1523145 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PLES_RS07340 (PLES_14151)	mutS	1523212..1525779 (-)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
PLES_RS07345 (PLES_14161)	-	1525905..1526912 (-)	1008	WP_012613731.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=29289 PLES_RS07330 WP_003113871.1 1521391..1522395(+) (rpoS) [Pseudomonas aeruginosa LESB58]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=29289 PLES_RS07330 WP_003113871.1 1521391..1522395(+) (rpoS) [Pseudomonas aeruginosa LESB58]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653