Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   DKG78_RS19970 Genome accession   NZ_CP029466
Coordinates   424307..424471 (+) Length   54 a.a.
NCBI ID   WP_269461319.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HM618     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 419307..429471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS19965 srfAB 421198..424290 (+) 3093 Protein_409 surfactin non-ribosomal peptide synthetase SrfAB -
  DKG78_RS19970 comS 424307..424471 (+) 165 WP_269461319.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6184.17 Da        Isoelectric Point: 12.0559

>NTDB_id=292849 DKG78_RS19970 WP_269461319.1 424307..424471(+) (comS) [Bacillus amyloliquefaciens strain HM618]
MRARRSSSLNRSDKRLIRSIILFPQHSAGCISLISSDRQARATTSLLYFCWKGQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=292849 DKG78_RS19970 WP_269461319.1 424307..424471(+) (comS) [Bacillus amyloliquefaciens strain HM618]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCAAGCACGAGCTACAACGTCCCTGCTGTACTTTTGCTGGAAGGGTC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

63.636

81.481

0.519

Multiple sequence alignment