Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   DKG78_RS13405 Genome accession   NZ_CP029466
Coordinates   2735567..2736319 (-) Length   250 a.a.
NCBI ID   WP_012118107.1    Uniprot ID   A7Z796
Organism   Bacillus amyloliquefaciens strain HM618     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2730567..2741319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS13380 (DKG78_13575) mreC 2731003..2731866 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  DKG78_RS13385 (DKG78_13580) mreB 2731897..2732910 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  DKG78_RS13390 (DKG78_13585) radC 2733002..2733697 (-) 696 WP_007408165.1 DNA repair protein RadC -
  DKG78_RS13395 (DKG78_13590) - 2733729..2734298 (-) 570 WP_007408164.1 nucleoside triphosphate pyrophosphatase -
  DKG78_RS13400 (DKG78_13595) - 2734439..2735440 (-) 1002 WP_132105449.1 SPOR domain-containing protein -
  DKG78_RS13405 (DKG78_13600) comC 2735567..2736319 (-) 753 WP_012118107.1 A24 family peptidase Machinery gene
  DKG78_RS13410 (DKG78_13605) - 2736458..2737750 (-) 1293 WP_132105451.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  DKG78_RS13415 (DKG78_13610) - 2737809..2740451 (-) 2643 WP_020956152.1 valine--tRNA ligase -
  DKG78_RS13420 (DKG78_13615) - 2740904..2741095 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27219.94 Da        Isoelectric Point: 9.4293

>NTDB_id=292828 DKG78_RS13405 WP_012118107.1 2735567..2736319(-) (comC) [Bacillus amyloliquefaciens strain HM618]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=292828 DKG78_RS13405 WP_012118107.1 2735567..2736319(-) (comC) [Bacillus amyloliquefaciens strain HM618]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGTATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGAGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z796

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment