Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DKG78_RS12585 Genome accession   NZ_CP029466
Coordinates   2584596..2585363 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus amyloliquefaciens strain HM618     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2579596..2590363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS12565 (DKG78_12760) - 2579798..2580610 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  DKG78_RS12570 (DKG78_12765) ccpN 2580636..2581274 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  DKG78_RS12575 (DKG78_12770) glyS 2581375..2583414 (-) 2040 WP_169510245.1 glycine--tRNA ligase subunit beta -
  DKG78_RS12580 (DKG78_12775) glyQ 2583407..2584294 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  DKG78_RS12585 (DKG78_12780) recO 2584596..2585363 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  DKG78_RS12590 (DKG78_12785) - 2585400..2585543 (-) 144 WP_007408286.1 YqzL family protein -
  DKG78_RS12595 (DKG78_12790) era 2585699..2586604 (-) 906 WP_025285010.1 GTPase Era -
  DKG78_RS12600 (DKG78_12795) - 2586585..2586995 (-) 411 WP_059368102.1 cytidine deaminase -
  DKG78_RS12605 (DKG78_12800) - 2587119..2587493 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  DKG78_RS12610 (DKG78_12805) ybeY 2587474..2587947 (-) 474 WP_012118016.1 rRNA maturation RNase YbeY -
  DKG78_RS12615 (DKG78_12810) - 2587948..2590080 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=292821 DKG78_RS12585 WP_007408287.1 2584596..2585363(-) (recO) [Bacillus amyloliquefaciens strain HM618]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=292821 DKG78_RS12585 WP_007408287.1 2584596..2585363(-) (recO) [Bacillus amyloliquefaciens strain HM618]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment