Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BPUM_RS09855 Genome accession   NC_009848
Coordinates   2014159..2014776 (+) Length   205 a.a.
NCBI ID   WP_012010348.1    Uniprot ID   A8FEG6
Organism   Bacillus pumilus SAFR-032     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2009159..2019776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPUM_RS09815 (BPUM_1955) - 2009329..2010447 (+) 1119 WP_225970084.1 NADH-dependent flavin oxidoreductase -
  BPUM_RS09820 (BPUM_1956) - 2010496..2011002 (-) 507 WP_012010341.1 PTS sugar transporter subunit IIA -
  BPUM_RS09825 (BPUM_1957) - 2011171..2011590 (+) 420 WP_012010342.1 Hsp20/alpha crystallin family protein -
  BPUM_RS09830 (BPUM_1958) - 2011611..2012063 (-) 453 WP_012010343.1 YppG family protein -
  BPUM_RS09835 (BPUM_1959) - 2012170..2012541 (-) 372 WP_012010344.1 YppE family protein -
  BPUM_RS09840 (BPUM_04175) - 2012599..2012832 (-) 234 WP_225970028.1 YppD family protein -
  BPUM_RS09845 (BPUM_1961) sspM 2013029..2013133 (+) 105 WP_012010346.1 acid-soluble spore protein SspM -
  BPUM_RS09850 (BPUM_1962) - 2013156..2014112 (-) 957 WP_012010347.1 DUF2515 domain-containing protein -
  BPUM_RS09855 (BPUM_1963) recU 2014159..2014776 (+) 618 WP_012010348.1 Holliday junction resolvase RecU Machinery gene
  BPUM_RS09860 (BPUM_1964) - 2014814..2017525 (+) 2712 WP_012010349.1 PBP1A family penicillin-binding protein -
  BPUM_RS09865 (BPUM_1965) - 2017560..2018069 (-) 510 WP_012010350.1 YpoC family protein -
  BPUM_RS09870 (BPUM_1966) nth 2018066..2018728 (-) 663 WP_012010351.1 endonuclease III -
  BPUM_RS09875 (BPUM_1967) - 2018746..2019450 (-) 705 WP_012010352.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23635.81 Da        Isoelectric Point: 8.9761

>NTDB_id=29282 BPUM_RS09855 WP_012010348.1 2014159..2014776(+) (recU) [Bacillus pumilus SAFR-032]
MIRYPNGKSYQPIQPIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYRGRYIDFEAKETKSTTSFPLKNFHEHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
LNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESEYQ

Nucleotide


Download         Length: 618 bp        

>NTDB_id=29282 BPUM_RS09855 WP_012010348.1 2014159..2014776(+) (recU) [Bacillus pumilus SAFR-032]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACCAATTGGGACAAAAAAACGAATTAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACTCTTGAGGCTGACTTAAACGAAACCAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCCGTTCAAATTGTGAACGTGGATTATCCAAAAAGAAGCGCTGCTGTGATCAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAATGGAGTGTACAGAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTTCATGAACATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCATTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAACGGCAGAAA
CTAAACGGCCGGAAATCCATTAGTAAAGATGAACTAATGGAAGCCGGTCACTTAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGTGAGTATCAATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FEG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

71.782

98.537

0.707

Multiple sequence alignment