Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   DKG78_RS11015 Genome accession   NZ_CP029466
Coordinates   2253517..2254125 (+) Length   202 a.a.
NCBI ID   WP_031304205.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HM618     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2248517..2259125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS10975 (DKG78_11160) - 2249537..2250043 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  DKG78_RS10980 (DKG78_11165) - 2250182..2250595 (+) 414 WP_007612169.1 Hsp20/alpha crystallin family protein -
  DKG78_RS10985 (DKG78_11170) - 2250625..2251092 (-) 468 WP_192452618.1 YppG family protein -
  DKG78_RS10990 (DKG78_11175) - 2251279..2251461 (+) 183 WP_003153532.1 YppF family protein -
  DKG78_RS10995 (DKG78_11180) - 2251500..2251868 (-) 369 WP_007409492.1 YppE family protein -
  DKG78_RS11000 (DKG78_11185) - 2251914..2252159 (-) 246 WP_015240083.1 DUF5446 family protein -
  DKG78_RS11005 (DKG78_11190) sspM 2252365..2252469 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  DKG78_RS11010 (DKG78_11195) - 2252513..2253475 (-) 963 WP_192452619.1 DUF2515 domain-containing protein -
  DKG78_RS11015 (DKG78_11200) recU 2253517..2254125 (+) 609 WP_031304205.1 Holliday junction resolvase RecU Machinery gene
  DKG78_RS11020 (DKG78_11205) - 2254164..2256947 (+) 2784 WP_192452620.1 PBP1A family penicillin-binding protein -
  DKG78_RS11025 (DKG78_11210) - 2257025..2257516 (-) 492 WP_192452621.1 YpoC family protein -
  DKG78_RS11030 (DKG78_11215) nth 2257513..2258172 (-) 660 WP_151280689.1 endonuclease III -
  DKG78_RS11035 (DKG78_11220) dnaD 2258191..2258889 (-) 699 WP_192452622.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23652.73 Da        Isoelectric Point: 9.5778

>NTDB_id=292811 DKG78_RS11015 WP_031304205.1 2253517..2254125(+) (recU) [Bacillus amyloliquefaciens strain HM618]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=292811 DKG78_RS11015 WP_031304205.1 2253517..2254125(+) (recU) [Bacillus amyloliquefaciens strain HM618]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCACGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment