Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   DKG78_RS07690 Genome accession   NZ_CP029466
Coordinates   1472691..1473155 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain HM618     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1467691..1478155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS07670 (DKG78_07790) - 1468172..1469992 (+) 1821 WP_192452969.1 PAS domain-containing protein -
  DKG78_RS07675 (DKG78_07795) - 1469973..1471186 (-) 1214 Protein_1468 aminotransferase A -
  DKG78_RS07680 - 1471387..1471548 (-) 162 WP_192452970.1 hypothetical protein -
  DKG78_RS07685 (DKG78_07805) cheV 1471737..1472648 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  DKG78_RS07690 (DKG78_07810) kre 1472691..1473155 (-) 465 WP_003154622.1 YkyB family protein Regulator
  DKG78_RS07695 (DKG78_07815) - 1473278..1474570 (-) 1293 WP_007611093.1 MFS transporter -
  DKG78_RS07700 (DKG78_07820) - 1474646..1475140 (-) 495 WP_088462390.1 L,D-transpeptidase family protein -
  DKG78_RS07705 (DKG78_07825) - 1475215..1476078 (-) 864 WP_132106137.1 metallophosphoesterase -
  DKG78_RS07710 (DKG78_07830) fadH 1476223..1476987 (+) 765 WP_015417368.1 2,4-dienoyl-CoA reductase -
  DKG78_RS07715 (DKG78_07835) - 1477152..1477648 (+) 497 Protein_1476 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=292803 DKG78_RS07690 WP_003154622.1 1472691..1473155(-) (kre) [Bacillus amyloliquefaciens strain HM618]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=292803 DKG78_RS07690 WP_003154622.1 1472691..1473155(-) (kre) [Bacillus amyloliquefaciens strain HM618]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment