Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   DKG78_RS05910 Genome accession   NZ_CP029466
Coordinates   1142664..1143242 (+) Length   192 a.a.
NCBI ID   WP_012117234.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HM618     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1137664..1148242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS20375 - 1138164..1138679 (-) 516 WP_370529535.1 methyl-accepting chemotaxis protein -
  DKG78_RS20380 - 1138923..1139582 (-) 660 Protein_1111 protoglobin domain-containing protein -
  DKG78_RS05895 (DKG78_06000) - 1139579..1141102 (-) 1524 WP_192452928.1 FAD-dependent oxidoreductase -
  DKG78_RS05900 (DKG78_06005) - 1141227..1142084 (+) 858 WP_015239527.1 SDR family oxidoreductase -
  DKG78_RS05905 (DKG78_06010) - 1142115..1142348 (-) 234 WP_012117233.1 IDEAL domain-containing protein -
  DKG78_RS05910 (DKG78_06015) comK 1142664..1143242 (+) 579 WP_012117234.1 competence protein ComK Regulator
  DKG78_RS05915 (DKG78_06020) - 1143388..1143756 (+) 369 WP_192452929.1 iron chaperone -
  DKG78_RS05920 (DKG78_06025) - 1143783..1144154 (+) 372 WP_012117236.1 iron chaperone -
  DKG78_RS05925 (DKG78_06030) - 1144277..1144786 (+) 510 WP_012117237.1 MepB family protein -
  DKG78_RS05930 (DKG78_06035) - 1145015..1145725 (-) 711 WP_015239530.1 YrpD family protein -
  DKG78_RS05935 (DKG78_06040) - 1145921..1146190 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  DKG78_RS05940 (DKG78_06045) - 1146222..1146539 (-) 318 WP_003155166.1 YbjQ family protein -
  DKG78_RS05945 (DKG78_06050) - 1146581..1148050 (-) 1470 WP_076423849.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22301.55 Da        Isoelectric Point: 8.1419

>NTDB_id=292792 DKG78_RS05910 WP_012117234.1 1142664..1143242(+) (comK) [Bacillus amyloliquefaciens strain HM618]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HVPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=292792 DKG78_RS05910 WP_012117234.1 1142664..1143242(+) (comK) [Bacillus amyloliquefaciens strain HM618]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTATTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACAGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATGTCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.812

100

0.828

Multiple sequence alignment