Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   DKG78_RS04860 Genome accession   NZ_CP029466
Coordinates   949873..950664 (+) Length   263 a.a.
NCBI ID   WP_015239427.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HM618     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 944873..955664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS04835 (DKG78_04900) - 946868..947752 (+) 885 WP_025284444.1 PhzF family phenazine biosynthesis isomerase -
  DKG78_RS04840 (DKG78_04905) - 947829..948413 (+) 585 WP_007408549.1 nitroreductase -
  DKG78_RS04845 (DKG78_04910) - 948452..948643 (-) 192 WP_003155508.1 YfhD family protein -
  DKG78_RS04850 (DKG78_04915) - 948714..948824 (-) 111 WP_003155504.1 YfhE family protein -
  DKG78_RS04855 (DKG78_04920) - 948882..949781 (-) 900 WP_025284445.1 TIGR01777 family oxidoreductase -
  DKG78_RS04860 (DKG78_04925) recX 949873..950664 (+) 792 WP_015239427.1 recombination regulator RecX Regulator
  DKG78_RS04865 (DKG78_04930) - 950671..950985 (+) 315 WP_076425438.1 YfhH family protein -
  DKG78_RS04870 (DKG78_04935) - 951129..952322 (+) 1194 WP_025284446.1 MFS transporter -
  DKG78_RS04875 (DKG78_04940) - 952362..952751 (-) 390 WP_132106469.1 DUF2606 family protein -
  DKG78_RS04880 (DKG78_04945) - 952714..953625 (-) 912 WP_132106471.1 serine protease -
  DKG78_RS04885 (DKG78_04950) - 953773..953925 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  DKG78_RS04890 (DKG78_04955) - 954049..954318 (+) 270 WP_003155492.1 YfhJ family protein -
  DKG78_RS04895 (DKG78_04960) - 954447..954974 (+) 528 WP_015417063.1 SH3 domain-containing protein -
  DKG78_RS04900 (DKG78_04965) - 955060..955395 (+) 336 WP_043020688.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30935.10 Da        Isoelectric Point: 5.8035

>NTDB_id=292787 DKG78_RS04860 WP_015239427.1 949873..950664(+) (recX) [Bacillus amyloliquefaciens strain HM618]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYSYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=292787 DKG78_RS04860 WP_015239427.1 949873..950664(+) (recX) [Bacillus amyloliquefaciens strain HM618]
ATGCCCTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACGCCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACAGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATTAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAGGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAGAATGACGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGTTATGACGGCAGCTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795

Multiple sequence alignment