Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DKG78_RS02445 Genome accession   NZ_CP029466
Coordinates   471400..472353 (+) Length   317 a.a.
NCBI ID   WP_059366593.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HM618     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 466400..477353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS02420 (DKG78_02455) - 466446..467879 (+) 1434 WP_162992601.1 HAMP domain-containing sensor histidine kinase -
  DKG78_RS02425 (DKG78_02460) rapC 468032..469180 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  DKG78_RS02430 (DKG78_02465) phrC 469164..469283 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  DKG78_RS02435 (DKG78_02470) - 469432..469542 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  DKG78_RS02440 (DKG78_02475) - 469622..470986 (-) 1365 WP_020955323.1 aspartate kinase -
  DKG78_RS02445 (DKG78_02480) ceuB 471400..472353 (+) 954 WP_059366593.1 ABC transporter permease Machinery gene
  DKG78_RS02450 (DKG78_02485) - 472343..473290 (+) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  DKG78_RS02455 (DKG78_02490) - 473284..474042 (+) 759 WP_012116804.1 ABC transporter ATP-binding protein -
  DKG78_RS02460 (DKG78_02495) - 474064..475008 (+) 945 WP_025284230.1 siderophore ABC transporter substrate-binding protein -
  DKG78_RS02465 (DKG78_02500) - 475050..476474 (-) 1425 WP_025284231.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=292785 DKG78_RS02445 WP_059366593.1 471400..472353(+) (ceuB) [Bacillus amyloliquefaciens strain HM618]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=292785 DKG78_RS02445 WP_059366593.1 471400..472353(+) (ceuB) [Bacillus amyloliquefaciens strain HM618]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCGGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGATTGGGCAAGGCTCGGAATCTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATATGACCTGATC
CAAAACCTGTCGTCTTGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTTTTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536

Multiple sequence alignment