Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DKG78_RS00250 Genome accession   NZ_CP029466
Coordinates   45548..45838 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HM618     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40548..50838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS00210 (DKG78_00210) darA 40565..40894 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  DKG78_RS00215 (DKG78_00215) - 40907..41347 (+) 441 WP_004264730.1 YaaR family protein -
  DKG78_RS00220 (DKG78_00220) holB 41359..42348 (+) 990 WP_052826959.1 DNA polymerase III subunit delta' -
  DKG78_RS00225 (DKG78_00225) ricT 42351..43178 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  DKG78_RS00230 (DKG78_00230) yabA 43193..43552 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  DKG78_RS00235 (DKG78_00235) - 43613..44356 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DKG78_RS00240 (DKG78_00240) - 44343..44642 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  DKG78_RS00245 (DKG78_00245) rsmI 44617..45498 (+) 882 WP_192452783.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  DKG78_RS00250 (DKG78_00250) abrB 45548..45838 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  DKG78_RS00255 (DKG78_00255) metG 46322..48313 (+) 1992 WP_011996169.1 methionine--tRNA ligase -
  DKG78_RS00260 (DKG78_00260) - 48389..49156 (+) 768 WP_025284081.1 TatD family hydrolase -
  DKG78_RS00265 (DKG78_00265) - 49291..50616 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=292777 DKG78_RS00250 WP_169510469.1 45548..45838(-) (abrB) [Bacillus amyloliquefaciens strain HM618]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=292777 DKG78_RS00250 WP_169510469.1 45548..45838(-) (abrB) [Bacillus amyloliquefaciens strain HM618]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGGGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment