Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BPUM_RS06675 Genome accession   NC_009848
Coordinates   1378830..1379411 (+) Length   193 a.a.
NCBI ID   WP_012009792.1    Uniprot ID   -
Organism   Bacillus pumilus SAFR-032     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1373830..1384411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPUM_RS06645 (BPUM_1315) dapD 1373954..1374664 (+) 711 WP_012009788.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  BPUM_RS06650 (BPUM_1316) - 1374697..1375875 (+) 1179 WP_049754900.1 N-acetyldiaminopimelate deacetylase -
  BPUM_RS06655 (BPUM_1317) - 1375926..1376168 (+) 243 WP_003211408.1 YkuS family protein -
  BPUM_RS06660 (BPUM_1318) - 1376195..1377004 (-) 810 WP_012009790.1 mechanosensitive ion channel family protein -
  BPUM_RS06665 (BPUM_1319) ahpA 1377276..1377818 (+) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  BPUM_RS06670 (BPUM_1320) - 1377901..1378359 (+) 459 WP_012009791.1 TlpA family protein disulfide reductase -
  BPUM_RS06675 (BPUM_1321) rok 1378830..1379411 (+) 582 WP_012009792.1 transcriptional regulator Rok Regulator
  BPUM_RS06680 (BPUM_1322) - 1379462..1380379 (-) 918 WP_012009793.1 hypothetical protein -
  BPUM_RS06685 (BPUM_1323) - 1380464..1381045 (+) 582 WP_012009794.1 molybdenum cofactor guanylyltransferase -
  BPUM_RS06690 (BPUM_1324) - 1381075..1382091 (+) 1017 WP_012009795.1 thiazole biosynthesis adenylyltransferase ThiF -
  BPUM_RS06695 (BPUM_1325) glp 1382101..1383378 (+) 1278 WP_012009796.1 gephyrin-like molybdotransferase Glp -
  BPUM_RS06700 (BPUM_1326) mobB 1383360..1383884 (+) 525 WP_012009797.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  BPUM_RS06705 (BPUM_1327) - 1383881..1384372 (+) 492 WP_012009798.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21774.71 Da        Isoelectric Point: 9.7309

>NTDB_id=29275 BPUM_RS06675 WP_012009792.1 1378830..1379411(+) (rok) [Bacillus pumilus SAFR-032]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQP
PAQSQSNSASSLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=29275 BPUM_RS06675 WP_012009792.1 1378830..1379411(+) (rok) [Bacillus pumilus SAFR-032]
TTGTTTAATGAGAGGGAAGCGTTACGATTACGATTGGAACAATTAAACGAGGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTGCGTACAGAAAGAAAAACGGATTCACTGCCTGTATTAGCTGAGCTGGCTGCACAGGAAATGAGAAGTTACCAGCCG
CCTGCACAATCACAATCTAATTCTGCATCATCTTTAGGAACAGGGCAGCTAAACGGTGCACCTGTAGGTATTCCTGAAGG
ATCTACAAGACGTAGAAGAGGCACAGCCCGCCCTGGTTCAAAGGCAGCTAAACTTCGTGAAGCTGCAATTAAAACGTTAA
AGCGTCATAATGCGGCGATTAAAAGCTCTGAACTTCAAAAAGAAATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAGCCATATCGCGGACAGTATATTCTAGAAGGCGA
TATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.053

98.446

0.798

Multiple sequence alignment