Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   DKG76_RS13505 Genome accession   NZ_CP029465
Coordinates   2732403..2732813 (-) Length   136 a.a.
NCBI ID   WP_003237136.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain KCTC 13429     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2727403..2737813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG76_RS13475 (DKG76_13475) - 2727866..2728597 (-) 732 WP_003237124.1 SGNH/GDSL hydrolase family protein -
  DKG76_RS13485 (DKG76_13485) - 2728850..2729602 (-) 753 WP_003237126.1 N-acetylmuramoyl-L-alanine amidase -
  DKG76_RS13490 (DKG76_13490) - 2729797..2730423 (+) 627 WP_003237129.1 TVP38/TMEM64 family protein -
  DKG76_RS13495 (DKG76_13495) gnd 2730442..2731335 (-) 894 WP_003237130.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  DKG76_RS13500 (DKG76_13500) - 2731648..2732370 (+) 723 WP_032731892.1 hypothetical protein -
  DKG76_RS13505 (DKG76_13505) nucA/comI 2732403..2732813 (-) 411 WP_003237136.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  DKG76_RS22485 (DKG76_13510) sigK 2733008..2733735 (+) 728 Protein_2617 RNA polymerase sporulation sigma factor SigK -
  DKG76_RS13515 (DKG76_13515) - 2733865..2734033 (-) 169 Protein_2618 recombinase family protein -
  DKG76_RS22300 (DKG76_13520) - 2733991..2734169 (-) 179 Protein_2619 hypothetical protein -
  DKG76_RS13525 (DKG76_13525) - 2734294..2735508 (-) 1215 WP_003237139.1 MFS transporter -
  DKG76_RS13535 (DKG76_13535) - 2735773..2737074 (-) 1302 WP_003237141.1 MFS transporter -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14992.02 Da        Isoelectric Point: 5.7516

>NTDB_id=292748 DKG76_RS13505 WP_003237136.1 2732403..2732813(-) (nucA/comI) [Bacillus inaquosorum strain KCTC 13429]
MKKWMAGLLLAAAVFLCLVVPQPIKSASLYDKVLYFPLSRYPETGDHIRDAIAEGHSDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSGYPDGTRVRFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=292748 DKG76_RS13505 WP_003237136.1 2732403..2732813(-) (nucA/comI) [Bacillus inaquosorum strain KCTC 13429]
ATGAAAAAATGGATGGCAGGCCTGCTTCTTGCTGCAGCAGTTTTTCTTTGTTTAGTGGTTCCGCAGCCGATCAAGAGCGC
TTCTTTGTATGACAAAGTGTTGTATTTTCCGCTGTCTCGTTATCCGGAAACAGGGGATCATATTAGAGATGCGATAGCAG
AGGGACATTCTGATATTTGTACCATCGACAGGGATGGAGCGGACAAAAGGCGAGAGGAATCATTAAAAGGAATTCCGACG
AAGCCGGGCTATGACCGGGATGAGTGGCCAATGGCGGTTTGCGAGGAAGGCGGCGCAGGAGCTGACGTCCGATATGTGAC
GCCTTCTGATAATCGTGGGGCCGGCTCGTGGGTAGGGAATCAAATGAGTGGTTATCCTGACGGCACCAGAGTGCGGTTTA
TTGTGCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529

Multiple sequence alignment