Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DKG76_RS13255 Genome accession   NZ_CP029465
Coordinates   2688860..2689627 (-) Length   255 a.a.
NCBI ID   WP_003237065.1    Uniprot ID   A0A9W5LJQ8
Organism   Bacillus inaquosorum strain KCTC 13429     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2683860..2694627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG76_RS13235 (DKG76_13235) - 2684042..2684845 (-) 804 Protein_2562 pyruvate, water dikinase regulatory protein -
  DKG76_RS13240 (DKG76_13240) ccpN 2684871..2685509 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  DKG76_RS13245 (DKG76_13245) glyS 2685643..2687682 (-) 2040 WP_003237060.1 glycine--tRNA ligase subunit beta -
  DKG76_RS13250 (DKG76_13250) glyQ 2687675..2688562 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  DKG76_RS13255 (DKG76_13255) recO 2688860..2689627 (-) 768 WP_003237065.1 DNA repair protein RecO Machinery gene
  DKG76_RS13260 (DKG76_13260) - 2689664..2689807 (-) 144 WP_003230053.1 YqzL family protein -
  DKG76_RS13265 (DKG76_13265) era 2689951..2690856 (-) 906 WP_003226207.1 GTPase Era -
  DKG76_RS13270 (DKG76_13270) - 2690837..2691247 (-) 411 WP_003237067.1 cytidine deaminase -
  DKG76_RS13275 (DKG76_13275) - 2691368..2691739 (-) 372 WP_003237069.1 diacylglycerol kinase family protein -
  DKG76_RS13280 (DKG76_13280) ybeY 2691720..2692193 (-) 474 WP_003237071.1 rRNA maturation RNase YbeY -
  DKG76_RS13285 (DKG76_13285) pgpH 2692194..2694329 (-) 2136 WP_080010837.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29373.11 Da        Isoelectric Point: 8.5618

>NTDB_id=292744 DKG76_RS13255 WP_003237065.1 2688860..2689627(-) (recO) [Bacillus inaquosorum strain KCTC 13429]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPFLFEFILESFKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKQETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=292744 DKG76_RS13255 WP_003237065.1 2688860..2689627(-) (recO) [Bacillus inaquosorum strain KCTC 13429]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAACGATTACGGAGAGACGAATAAAATCGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCAAGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCTTAATGCAAAAAACAACGGGCCTCGGAACGCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCGTATATTGCTGAGCTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAACCCTTTCTTGTTTGAATTCATTTTAGAATCGTTTAAACAGCTGAATGAAGGAACAGATCCGGATGTCATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGGCTGTATCCCGAGCTGAATCACTGTGTGCATTGTAAAAGCCAGGACGGG
ACATTTCATTTCTCTGTCCGTGATAACGGGTTTATTTGCCATCGCTGTTTTGAAAAAGATCCTTACAGGATTCCGATTAA
ACCGCAAACGGCAAGGCTGTTGAGGCTGTTTTATTACTTCGATCTGTCGAGGCTGGGCAATGTGTCCTTAAAACAGGAAA
CAAAAGCTGAATTGAAGCAAGTGATTGATTTATATTATGAGGAATATTCAGGGTTATATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

98.039

100

0.98

Multiple sequence alignment