Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   BPUM_RS06560 Genome accession   NC_009848
Coordinates   1360494..1360955 (-) Length   153 a.a.
NCBI ID   WP_012009774.1    Uniprot ID   A0AAE4B719
Organism   Bacillus pumilus SAFR-032     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1355494..1365955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPUM_RS06540 (BPUM_1292) - 1356103..1356987 (+) 885 WP_012009769.1 cation diffusion facilitator family transporter -
  BPUM_RS19170 (BPUM_1293) - 1357049..1357201 (-) 153 WP_012009770.1 hypothetical protein -
  BPUM_RS06545 (BPUM_1294) - 1357503..1358042 (+) 540 WP_012009771.1 RDD family protein -
  BPUM_RS06550 (BPUM_1295) - 1358168..1359478 (+) 1311 WP_012009772.1 MFS transporter -
  BPUM_RS06555 (BPUM_1296) - 1359552..1360460 (+) 909 WP_012009773.1 chemotaxis protein -
  BPUM_RS06560 (BPUM_1297) kre 1360494..1360955 (-) 462 WP_012009774.1 YkyB family protein Regulator
  BPUM_RS06565 (BPUM_1298) - 1361456..1361671 (-) 216 WP_012009775.1 hypothetical protein -
  BPUM_RS06570 (BPUM_1300) - 1362079..1363356 (-) 1278 WP_041815467.1 MFS transporter -
  BPUM_RS06575 (BPUM_1301) - 1363430..1363927 (-) 498 WP_012009778.1 L,D-transpeptidase family protein -
  BPUM_RS06580 (BPUM_1302) - 1364084..1364941 (-) 858 WP_012009779.1 metallophosphoesterase -
  BPUM_RS06585 (BPUM_1303) fadH 1365078..1365842 (+) 765 WP_012009780.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17741.33 Da        Isoelectric Point: 10.2452

>NTDB_id=29274 BPUM_RS06560 WP_012009774.1 1360494..1360955(-) (kre) [Bacillus pumilus SAFR-032]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQLLQTYVGLKEKPTATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=29274 BPUM_RS06560 WP_012009774.1 1360494..1360955(-) (kre) [Bacillus pumilus SAFR-032]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAATTTCTTTATCTTTTGAAAAAACGTGCGCTGCAGAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
CCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAACTGCTTCAAACGTATGTCGGTTTAAAAGAAAAACCTACCGCCA
CAAAACAAAAATCACATTATACAAAGCCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771

Multiple sequence alignment