Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   DKG76_RS11745 Genome accession   NZ_CP029465
Coordinates   2421568..2422188 (+) Length   206 a.a.
NCBI ID   WP_004398007.1    Uniprot ID   A0A9W5LEN4
Organism   Bacillus inaquosorum strain KCTC 13429     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2416568..2427188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG76_RS11705 (DKG76_11705) - 2417709..2418215 (-) 507 WP_029316845.1 PTS glucose transporter subunit IIA -
  DKG76_RS11710 (DKG76_11710) - 2418353..2418772 (+) 420 WP_004398001.1 Hsp20/alpha crystallin family protein -
  DKG76_RS11715 (DKG76_11715) - 2418793..2419161 (-) 369 WP_004398002.1 YppG family protein -
  DKG76_RS11720 (DKG76_11720) - 2419348..2419536 (+) 189 WP_003225611.1 YppF family protein -
  DKG76_RS11725 (DKG76_11725) - 2419575..2419946 (-) 372 WP_004398003.1 YppE family protein -
  DKG76_RS11730 (DKG76_11730) - 2419992..2420237 (-) 246 WP_004398004.1 DUF5446 family protein -
  DKG76_RS11735 (DKG76_11735) sspM 2420436..2420540 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  DKG76_RS11740 (DKG76_11740) - 2420565..2421527 (-) 963 WP_004398006.1 DUF2515 domain-containing protein -
  DKG76_RS11745 (DKG76_11745) recU 2421568..2422188 (+) 621 WP_004398007.1 Holliday junction resolvase RecU Machinery gene
  DKG76_RS11750 (DKG76_11750) - 2422211..2424964 (+) 2754 WP_004398008.1 PBP1A family penicillin-binding protein -
  DKG76_RS11755 (DKG76_11755) - 2425036..2425530 (-) 495 WP_004398011.1 YpoC family protein -
  DKG76_RS11760 (DKG76_11760) nth 2425527..2426186 (-) 660 WP_004398013.1 endonuclease III -
  DKG76_RS11765 (DKG76_11765) dnaD 2426205..2426903 (-) 699 WP_004398016.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=292732 DKG76_RS11745 WP_004398007.1 2421568..2422188(+) (recU) [Bacillus inaquosorum strain KCTC 13429]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=292732 DKG76_RS11745 WP_004398007.1 2421568..2422188(+) (recU) [Bacillus inaquosorum strain KCTC 13429]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTCA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGATTATAACGGGATTTACAAAGGGCGATATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTCTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGTAAAGATGAGTTAGAGGAAGCGGCGTATCCGATTTCTCTTGGATACGCACCTAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCTTCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.029

100

0.99

Multiple sequence alignment