Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   DKG76_RS10875 Genome accession   NZ_CP029465
Coordinates   2273028..2274158 (+) Length   376 a.a.
NCBI ID   WP_003241749.1    Uniprot ID   A0A9W5LF35
Organism   Bacillus inaquosorum strain KCTC 13429     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2248553..2295653 2273028..2274158 within 0


Gene organization within MGE regions


Location: 2248553..2295653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG76_RS10700 (DKG76_10700) - 2248553..2248903 (+) 351 WP_003241819.1 DUF2200 domain-containing protein -
  DKG76_RS10705 (DKG76_10705) - 2249189..2249472 (-) 284 Protein_2056 T7SS effector LXG polymorphic toxin -
  DKG76_RS10710 (DKG76_10710) - 2249570..2250124 (-) 555 WP_032732306.1 SMI1/KNR4 family protein -
  DKG76_RS10715 (DKG76_10715) - 2250268..2251704 (+) 1437 WP_162532067.1 flavin monoamine oxidase family protein -
  DKG76_RS10720 (DKG76_10720) adhP 2251877..2252041 (-) 165 Protein_2059 alcohol dehydrogenase AdhP -
  DKG76_RS10725 (DKG76_10725) xynA 2252445..2253086 (-) 642 WP_003241809.1 endo-1,4-beta-xylanase XynA -
  DKG76_RS10730 (DKG76_10730) - 2253394..2253988 (+) 595 Protein_2061 ATP-dependent DNA ligase -
  DKG76_RS10735 (DKG76_10735) - 2254054..2254437 (-) 384 Protein_2062 hypothetical protein -
  DKG76_RS10740 (DKG76_10740) - 2254680..2255816 (-) 1137 WP_003241805.1 site-specific integrase -
  DKG76_RS10750 (DKG76_10750) - 2257337..2257729 (-) 393 WP_032732305.1 hypothetical protein -
  DKG76_RS10755 (DKG76_10755) - 2258018..2258245 (+) 228 WP_003241798.1 helix-turn-helix transcriptional regulator -
  DKG76_RS10760 (DKG76_10760) - 2258475..2258660 (+) 186 WP_003241796.1 hypothetical protein -
  DKG76_RS10765 (DKG76_10765) - 2258899..2259180 (-) 282 WP_003241794.1 hypothetical protein -
  DKG76_RS10775 (DKG76_10775) - 2259410..2259754 (-) 345 WP_032732304.1 hypothetical protein -
  DKG76_RS10780 (DKG76_10780) - 2259804..2260460 (-) 657 WP_003241789.1 uracil-DNA glycosylase family protein -
  DKG76_RS10785 (DKG76_10785) - 2260571..2260882 (-) 312 WP_032732331.1 hypothetical protein -
  DKG76_RS10790 (DKG76_10790) - 2260901..2261032 (-) 132 WP_003241785.1 hypothetical protein -
  DKG76_RS10795 (DKG76_10795) - 2261043..2261258 (-) 216 WP_003241782.1 hypothetical protein -
  DKG76_RS10800 (DKG76_10800) - 2261262..2261513 (-) 252 WP_003241780.1 hypothetical protein -
  DKG76_RS10805 (DKG76_10805) - 2261623..2261763 (+) 141 WP_080030913.1 hypothetical protein -
  DKG76_RS10810 (DKG76_10810) - 2262211..2263179 (-) 969 WP_003241778.1 DUF4062 domain-containing protein -
  DKG76_RS10815 (DKG76_10815) - 2263216..2264067 (-) 852 WP_003241776.1 hypothetical protein -
  DKG76_RS10820 (DKG76_10820) - 2264039..2264716 (-) 678 WP_003241773.1 hypothetical protein -
  DKG76_RS10825 (DKG76_10825) - 2264807..2265034 (-) 228 WP_003241772.1 helix-turn-helix transcriptional regulator -
  DKG76_RS10830 (DKG76_10830) - 2265126..2265563 (-) 438 WP_003241770.1 hypothetical protein -
  DKG76_RS10835 (DKG76_10835) - 2265654..2266037 (-) 384 WP_032732328.1 UPF0715 family protein -
  DKG76_RS10840 (DKG76_10840) - 2266134..2267078 (-) 945 WP_003241766.1 bacteriophage abortive infection AbiH family protein -
  DKG76_RS10845 (DKG76_10845) - 2267123..2267365 (-) 243 WP_003241763.1 hypothetical protein -
  DKG76_RS22110 - 2268273..2269787 (-) 1515 WP_003241759.1 hypothetical protein -
  DKG76_RS10860 (DKG76_10860) - 2269870..2270748 (-) 879 WP_003241757.1 tyrosine-type recombinase/integrase -
  DKG76_RS10865 (DKG76_10865) - 2270923..2271666 (+) 744 WP_003241756.1 GIY-YIG nuclease family protein -
  DKG76_RS10870 (DKG76_10870) - 2272756..2272896 (+) 141 WP_003241752.1 phage holin -
  DKG76_RS10875 (DKG76_10875) rapC 2273028..2274158 (+) 1131 WP_003241749.1 tetratricopeptide repeat protein Regulator
  DKG76_RS21915 - 2274148..2274291 (+) 144 WP_162532064.1 hypothetical protein -
  DKG76_RS10880 (DKG76_10880) - 2274612..2275079 (-) 468 WP_003241747.1 hypothetical protein -
  DKG76_RS10885 (DKG76_10885) - 2275081..2275656 (-) 576 WP_003241745.1 hypothetical protein -
  DKG76_RS10890 (DKG76_10890) - 2275877..2277127 (-) 1251 WP_003241743.1 lesion bypass phage DNA polymerase -
  DKG76_RS10895 (DKG76_10895) - 2277120..2277452 (-) 333 WP_003241741.1 YolD-like family protein -
  DKG76_RS10900 (DKG76_10900) - 2277626..2277961 (+) 336 WP_003241738.1 hypothetical protein -
  DKG76_RS10905 (DKG76_10905) - 2278000..2278359 (-) 360 WP_032732301.1 hypothetical protein -
  DKG76_RS10910 (DKG76_10910) - 2278365..2278832 (-) 468 WP_003241736.1 DUF4879 domain-containing protein -
  DKG76_RS21920 - 2279072..2279152 (+) 81 WP_127721184.1 putative holin-like toxin -
  DKG76_RS10915 (DKG76_10915) - 2279467..2279925 (-) 459 WP_003241734.1 YrhA family protein -
  DKG76_RS10920 (DKG76_10920) - 2280031..2280609 (-) 579 WP_003241731.1 SMI1/KNR4 family protein -
  DKG76_RS10925 (DKG76_10925) - 2280665..2281123 (-) 459 WP_003241729.1 SMI1/KNR4 family protein -
  DKG76_RS10930 (DKG76_10930) yobL 2281133..2282935 (-) 1803 WP_003241727.1 LXG family T7SS effector ribonuclease toxin YobL -
  DKG76_RS10935 (DKG76_10935) - 2283035..2283592 (-) 558 WP_032732300.1 SMI1/KNR4 family protein -
  DKG76_RS10940 (DKG76_10940) - 2283613..2284599 (-) 987 WP_003241723.1 HNH endonuclease signature motif containing protein -
  DKG76_RS10945 (DKG76_10945) yokF 2284867..2285757 (+) 891 WP_003241721.1 endonuclease YokF -
  DKG76_RS10950 (DKG76_10950) - 2286104..2286931 (-) 828 WP_003241719.1 hypothetical protein -
  DKG76_RS10955 (DKG76_10955) - 2287037..2287921 (-) 885 WP_003241714.1 HNH endonuclease -
  DKG76_RS10960 (DKG76_10960) - 2288014..2288853 (-) 840 WP_003241712.1 SMI1/KNR4 family protein -
  DKG76_RS10970 (DKG76_10970) - 2289705..2290787 (-) 1083 WP_109571623.1 hypothetical protein -
  DKG76_RS21925 - 2291382..2291516 (-) 135 WP_003241706.1 lysogeny pheromone AimP family peptide -
  DKG76_RS10980 (DKG76_10980) - 2291563..2292309 (-) 747 WP_305765035.1 AimR family lysis-lysogeny pheromone receptor -
  DKG76_RS22265 - 2292333..2292524 (-) 192 WP_003241702.1 hypothetical protein -
  DKG76_RS10985 (DKG76_10985) - 2292753..2293307 (+) 555 WP_003241701.1 helix-turn-helix transcriptional regulator -
  DKG76_RS10990 (DKG76_10990) csaA 2293773..2294105 (-) 333 WP_003241699.1 chaperone CsaA -
  DKG76_RS10995 (DKG76_10995) - 2294170..2294895 (-) 726 WP_080030907.1 helix-turn-helix domain-containing protein -
  DKG76_RS11000 (DKG76_11000) - 2294910..2295653 (-) 744 WP_003241695.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44220.08 Da        Isoelectric Point: 6.2537

>NTDB_id=292731 DKG76_RS10875 WP_003241749.1 2273028..2274158(+) (rapC) [Bacillus inaquosorum strain KCTC 13429]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKGQKTYTVRRIQCAFVVAGNFDDLESHEKAIPHLQKALKDSKAINKHKLIGASLYNLGNCYYKMKEYGKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFAVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=292731 DKG76_RS10875 WP_003241749.1 2273028..2274158(+) (rapC) [Bacillus inaquosorum strain KCTC 13429]
ATGGAGCAATTAATTCCGTCATCCACAGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGCTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGTCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCAGAAGCAGCCCTTAACATTTATAAAGGCCAAAAAACTTATACTGTTCGTAGAATTCAATGTGCATTTGTTGTAGC
AGGGAACTTCGATGATTTGGAAAGTCATGAAAAAGCTATTCCACACCTTCAGAAAGCTTTGAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATAGGGGCATCATTATATAATTTGGGAAACTGTTATTATAAGATGAAAGAGTATGGCAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGATCTTCTCCCTCATACATTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATAAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTTCGAACT
TTTTCTGTACTAAAAGATAATGTTATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGCCGTTATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(193-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

50.798

100

0.508
  rapF Bacillus subtilis subsp. subtilis str. 168

45.646

100

0.46

Multiple sequence alignment