Detailed information NTG0029273

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: BPUM_RS06385
• Genome accession: NC_009848
• Coordinates: 1321228..1323330 (-)
• Length: 700 a.a.
• NCBI ID: WP_012009743.1
• Uniprot ID: -
• Organism: Bacillus pumilus SAFR-032
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1316228..1328330

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BPUM_RS06360 (BPUM_1256)	-	1316816..1317058 (+)	243	WP_012009739.1	aspartyl-phosphate phosphatase Spo0E family protein	-
BPUM_RS06365 (BPUM_1257)	-	1317106..1318611 (-)	1506	WP_012009740.1	ATP-binding protein	-
BPUM_RS06370 (BPUM_1258)	-	1318817..1319272 (+)	456	WP_003211701.1	MarR family winged helix-turn-helix transcriptional regulator	-
BPUM_RS06375 (BPUM_1259)	motB	1319302..1320066 (-)	765	WP_012009741.1	flagellar motor protein MotB	-
BPUM_RS06380 (BPUM_1260)	motA	1320059..1320853 (-)	795	WP_012009742.1	flagellar motor stator protein MotA	-
BPUM_RS06385 (BPUM_1261)	clpC	1321228..1323330 (-)	2103	WP_012009743.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
BPUM_RS06390 (BPUM_1262)	-	1323576..1324619 (+)	1044	WP_012009744.1	membrane protein	-
BPUM_RS06395 (BPUM_1263)	queC	1324895..1325551 (+)	657	WP_012009745.1	7-cyano-7-deazaguanine synthase QueC	-
BPUM_RS06400 (BPUM_1264)	queD	1325552..1325992 (+)	441	WP_012009746.1	6-carboxytetrahydropterin synthase QueD	-
BPUM_RS06405 (BPUM_1265)	queE	1325985..1326716 (+)	732	WP_012009747.1	7-carboxy-7-deazaguanine synthase QueE	-
BPUM_RS06410 (BPUM_1266)	queF	1326732..1327229 (+)	498	WP_003211403.1	preQ(1) synthase	-
BPUM_RS06420 (BPUM_1268)	-	1327696..1327914 (+)	219	WP_012009749.1	hypothetical protein	-

Sequence

Protein

• Length: 700 a.a.
• Molecular weight: 78024.70 Da
• Isoelectric Point: 5.1753

>NTDB_id=29273 BPUM_RS06385 WP_012009743.1 1321228..1323330(-) (clpC) [Bacillus pumilus SAFR-032]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSEQAGHTQNVEQPKHKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGIRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQAEAIEILKGIQDKYESYHGITYSDEAIQACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLSEIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTNHKEHVVTAEDIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSREAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKTVKVGFQSDQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDRDDLVKIVDLLLNELSAQLKEQNLTVHVT
KEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEDKLLGFTVDVEDNEIVVKKG

Nucleotide

• Length: 2103 bp

>NTDB_id=29273 BPUM_RS06385 WP_012009743.1 1321228..1323330(-) (clpC) [Bacillus pumilus SAFR-032]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACAATTCGCCTGAATATGCAAGTGAATTCATCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTACACCTCTTTGATGGAGCAATCAAAAATGAAAATGGGACCTCAATTGTTCGGAGGAAGCTCAT
TCTTCTCTGAGCAAGCAGGACATACGCAAAACGTAGAGCAGCCAAAGCATAAAGGCTTACTCGATGAACTTGGCCGAAAT
TTAACAGATGGCGCGAATGCTGGTTTAATTGATCCAGTCATCGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAACAATCCCGTCCTCATTGGTGAACCAGGTGTTGGGAAAACAGCGATTGCTGAAGGACTTGCAC
TGAAAATTGCAAGTGGCGATGTACCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCGTCCCTTGTCGCG
AACACAGGAATACGTGGTCAATTTGAGGAAAGAATGAAGCAGTTAATTAAAGAATTGCAAAGCCGTAAAAATATTATCTT
ATTTGTAGATGAAATTCATCTTCTTGTAGGCGCAGGGTCTGCCGAAGGGTCAATGGATGCTGGAAACATCTTAAAACCAG
CCCTTGCACGAGGCGAGCTCCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGTCAAATTGAAAAAGATGCCGCACTT
GAACGGCGCTTCCAGCCCGTCATTGTAGATGAGCCAACACAAGCTGAAGCAATCGAGATTTTAAAAGGCATTCAAGATAA
GTATGAAAGCTACCATGGCATCACCTATTCAGACGAAGCGATTCAAGCGTGTGTTCAATTATCTTCACGGTATATCCAGG
ACCGTCATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAGGCGAACCTCTCCATTGATGCCGCAAGT
GAAGATGAACTAACAAATCGCCTGAGTGAAATTGCTGCTGAAAAACAGGCTGCTTTAAAAGAAGAACAATACGAAAAAGC
AGCAAAGCTTCGAGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAAATCACAAAGAACATGTCGTCACAG
CAGAAGACATTCAAGCCATTGTCGAACAAAAAACAGGCATCCCTGTTGGCAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGACGTCCGCTTAAAAGCACGAGTGATCGGTCAGGAACATGCGGTTGAAAAAGTCGCAAAAGCTGTGAAGAG
AAGTAGAGCCGGCTTAAAATCAAAACATAGACCAACTGGCTCCTTCCTATTCGTTGGACCAACAGGTGTTGGGAAAACCG
AATTATCAAAAACGCTAGCTGAAGAATTATTTGGTTCACGAGAGGCGATCATCCGTTTAGATATGAGTGAGTACATGGAG
AAACACTCAGTATCTAAGCTCATCGGTTCTCCACCTGGTTATGTTGGACATGATGAAGCAGGTCAACTGACAGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACACCCTGATGTGCAGCACATGTTCCTTCAAA
TCATGGAAGATGGCCGGTTAACAGACAGCCAAGGCAGAACTGTCAGCTTTAAAGATACAGTCATCATCATGACAAGTAAC
GCAGGCAGCACAGATAAAACGGTTAAAGTCGGCTTCCAGTCTGATCAGGAAGAAGCAATCGAGGAACAATCACTCATTGA
TTCACTCAGCGCCTATTTCAAACCAGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGACTCCTTAGATCGAGATG
ATTTAGTGAAGATTGTAGATCTTCTGCTCAATGAGCTGTCAGCACAATTAAAAGAGCAAAATTTAACAGTCCATGTGACA
AAAGAAGCGAAAGAAAAAATTGCAGAACTTGGATATCATCCTGCATTTGGTGCTCGTCCACTGCGAAGAACCATTCAAGA
GCACGTTGAAGATCAAATGACGGAGATATTGCTTGAAGAAGATAAGCTTTTAGGATTTACTGTAGATGTTGAAGATAACG
AAATTGTCGTTAAAAAAGGATAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (116-248)

• AAA lid domain (AAA_lid_9) (254-353)

• AAA domain (Cdc48 subfamily) (AAA_2) (437-604)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (610-681)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	56.233	100	0.593
clpE	Streptococcus mutans UA159	56.906	100	0.589
clpE	Streptococcus pneumoniae Rx1	55.11	100	0.57
clpE	Streptococcus pneumoniae D39	55.11	100	0.57
clpE	Streptococcus pneumoniae R6	55.11	100	0.57
clpE	Streptococcus pneumoniae TIGR4	55.11	100	0.57
clpC	Bacillus subtilis subsp. subtilis str. 168	53.582	95.714	0.513
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.276	89.143	0.421
clpC	Streptococcus thermophilus LMD-9	45.984	90.714	0.417
clpC	Streptococcus thermophilus LMG 18311	45.827	90.714	0.416
clpC	Streptococcus pneumoniae TIGR4	45.701	89.714	0.41
clpC	Streptococcus pneumoniae Rx1	45.907	89	0.409
clpC	Streptococcus pneumoniae D39	45.907	89	0.409
clpC	Streptococcus mutans UA159	44.375	91.429	0.406