Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DKG76_RS08075 Genome accession   NZ_CP029465
Coordinates   1576072..1576350 (+) Length   92 a.a.
NCBI ID   WP_003238863.1    Uniprot ID   A0A9Q4EYY4
Organism   Bacillus inaquosorum strain KCTC 13429     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1571072..1581350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG76_RS08055 (DKG76_08055) - 1572264..1573175 (+) 912 WP_003238869.1 ketopantoate reductase family protein -
  DKG76_RS08060 (DKG76_08060) - 1573204..1574436 (-) 1233 WP_003238866.1 aminopeptidase -
  DKG76_RS08065 (DKG76_08065) - 1574548..1574682 (-) 135 WP_003238865.1 protein YkpC -
  DKG76_RS08070 (DKG76_08070) mreBH 1574782..1575789 (-) 1008 WP_029316824.1 cell shape-determining protein MreBH -
  DKG76_RS08075 (DKG76_08075) abrB 1576072..1576350 (+) 279 WP_003238863.1 transcriptional regulator AbhA Regulator
  DKG76_RS08080 (DKG76_08080) kinC 1576542..1577828 (+) 1287 WP_003238862.1 two-component sensor histidine kinase KinC -
  DKG76_RS08085 (DKG76_08085) - 1577844..1578671 (+) 828 WP_003238861.1 gamma-glutamylcyclotransferase -
  DKG76_RS08090 (DKG76_08090) ktrC 1578743..1579408 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  DKG76_RS08095 (DKG76_08095) ade 1579566..1581299 (+) 1734 WP_109571616.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10242.04 Da        Isoelectric Point: 5.8742

>NTDB_id=292726 DKG76_RS08075 WP_003238863.1 1576072..1576350(+) (abrB) [Bacillus inaquosorum strain KCTC 13429]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSDNKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=292726 DKG76_RS08075 WP_003238863.1 1576072..1576350(+) (abrB) [Bacillus inaquosorum strain KCTC 13429]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGTATTGTTATGCCGATAGAATTAAGACGGGCACTGGA
TATTGCCATAAAAGACAGTATTGAATTTTTTGTCGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGTGTTT
GTTTAATGACCGGAGAAATCACTTCAGATAATAAAGAATACGGCAACGGTAAAATTACGTTAAGCCCAGAAGGTGCACAG
CTGCTTCTTGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

59.341

98.913

0.587

Multiple sequence alignment