Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   DKG76_RS01960 Genome accession   NZ_CP029465
Coordinates   364829..365227 (-) Length   132 a.a.
NCBI ID   WP_003241129.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain KCTC 13429     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 359829..370227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG76_RS01930 (DKG76_01930) - 360401..361081 (-) 681 WP_003241140.1 amino acid ABC transporter permease -
  DKG76_RS01935 (DKG76_01935) - 361091..361954 (-) 864 WP_080030895.1 transporter substrate-binding domain-containing protein -
  DKG76_RS01945 (DKG76_01945) - 362337..362792 (+) 456 WP_003241134.1 RDD family protein -
  DKG76_RS01950 (DKG76_01950) - 362875..363207 (+) 333 WP_003241133.1 YckD family protein -
  DKG76_RS01955 (DKG76_01955) bglC 363359..364792 (+) 1434 WP_003241131.1 6-phospho-beta-glucosidase -
  DKG76_RS01960 (DKG76_01960) nin/comJ 364829..365227 (-) 399 WP_003241129.1 DNA-entry nuclease inhibitor Regulator
  DKG76_RS01965 (DKG76_01965) nucA/comI 365254..365703 (-) 450 WP_162532063.1 DNA-entry nuclease Machinery gene
  DKG76_RS01970 (DKG76_01970) tlpC 365878..367602 (-) 1725 WP_003241123.1 methyl-accepting chemotaxis protein TlpC -
  DKG76_RS01975 (DKG76_01975) hxlB 367714..368271 (-) 558 WP_003241122.1 6-phospho-3-hexuloisomerase -
  DKG76_RS01980 (DKG76_01980) hxlA 368277..368909 (-) 633 WP_003241120.1 3-hexulose-6-phosphate synthase -
  DKG76_RS01985 (DKG76_01985) hxlR 369141..369503 (+) 363 WP_003241118.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14921.86 Da        Isoelectric Point: 4.7424

>NTDB_id=292702 DKG76_RS01960 WP_003241129.1 364829..365227(-) (nin/comJ) [Bacillus inaquosorum strain KCTC 13429]
MIKSWKPQELSISYHQFTVFQKDSAPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIEIESIMSKRLSFDLPKGDYQLTCWTVPAEKSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=292702 DKG76_RS01960 WP_003241129.1 364829..365227(-) (nin/comJ) [Bacillus inaquosorum strain KCTC 13429]
TTGATCAAGTCATGGAAGCCGCAAGAACTGTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCCGCACCTCC
TGTCATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCGGACGGAGCAATTTCCTTTGAGGCTCAGAGAA
ATACAAAGGCATTTATTCTTTTGCGCCTTAACAGTTCAGAAACTGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTGAGATTGAAAGCATTATGTCTAAAAGGCTGTCCTTTGATCTTCCTAAAGGGGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAAAGTCAGATCTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

96.97

100

0.97

Multiple sequence alignment