Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   DKE43_RS16740 Genome accession   NZ_CP029464
Coordinates   3205259..3205687 (-) Length   142 a.a.
NCBI ID   WP_034664156.1    Uniprot ID   A0AAE3WLD3
Organism   Bacillus pumilus strain ZB201701     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3200259..3210687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKE43_RS16710 (DKE43_16765) - 3200416..3200745 (+) 330 WP_106039412.1 YckD family protein -
  DKE43_RS16715 (DKE43_16770) - 3200795..3201559 (-) 765 WP_106072315.1 MBL fold metallo-hydrolase -
  DKE43_RS16720 (DKE43_16775) - 3201675..3202091 (+) 417 WP_034664465.1 Lrp/AsnC family transcriptional regulator -
  DKE43_RS16725 (DKE43_16780) - 3202120..3202926 (+) 807 WP_095285948.1 AAC(3) family N-acetyltransferase -
  DKE43_RS16730 (DKE43_16785) - 3202928..3203314 (-) 387 WP_106031574.1 competence protein ComJ -
  DKE43_RS16735 (DKE43_16790) - 3203435..3205132 (-) 1698 WP_127687362.1 methyl-accepting chemotaxis protein -
  DKE43_RS16740 (DKE43_16795) nucA/comI 3205259..3205687 (-) 429 WP_034664156.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  DKE43_RS16750 (DKE43_16805) - 3206055..3208124 (+) 2070 WP_127687364.1 hydantoinase/oxoprolinase family protein -
  DKE43_RS16755 (DKE43_16810) - 3208114..3210099 (+) 1986 WP_106037080.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15886.79 Da        Isoelectric Point: 5.5444

>NTDB_id=292693 DKE43_RS16740 WP_034664156.1 3205259..3205687(-) (nucA/comI) [Bacillus pumilus strain ZB201701]
MKLLKIILLLLLIVVGVATGYIQLEQSKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSVCTIDRKHSDEQRDQS
LHGIPTKRGYDRDEWPMAMCKEGGTGASVKYISPSDNRGAGSWVGHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=292693 DKE43_RS16740 WP_034664156.1 3205259..3205687(-) (nucA/comI) [Bacillus pumilus strain ZB201701]
ATGAAACTTCTTAAAATCATTCTCTTGCTTTTACTAATCGTCGTTGGTGTAGCAACAGGCTATATTCAGCTGGAGCAAAG
TAAACAAGAGACGACGAATTCATCTTATGACAAAACCATTCACTTCCCATCAGATCGTTACCCAGAAACCGCGAAGCACA
TAGAAGAGGCAATTGATGAAGGCCATTCATCCGTATGTACGATTGACCGTAAACATAGCGATGAACAGAGAGACCAATCA
CTTCATGGCATCCCAACAAAGCGCGGGTATGATCGGGACGAATGGCCGATGGCGATGTGTAAGGAAGGAGGAACAGGAGC
TTCTGTCAAATATATCAGTCCTTCAGATAATAGGGGAGCAGGCTCATGGGTCGGTCATCAATTATCGGATGATCCTGACG
GCACAAGAATACAATTTATCATCGATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.116

85.211

0.563

Multiple sequence alignment