Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | DKE43_RS15450 | Genome accession | NZ_CP029464 |
| Coordinates | 2965550..2967985 (+) | Length | 811 a.a. |
| NCBI ID | WP_034665649.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain ZB201701 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2960550..2972985
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DKE43_RS15435 (DKE43_15495) | - | 2963421..2963885 (+) | 465 | WP_003217184.1 | CtsR family transcriptional regulator | - |
| DKE43_RS15440 (DKE43_15500) | - | 2963900..2964457 (+) | 558 | WP_066031441.1 | UvrB/UvrC motif-containing protein | - |
| DKE43_RS15445 (DKE43_15505) | - | 2964462..2965553 (+) | 1092 | WP_034665652.1 | protein arginine kinase | - |
| DKE43_RS15450 (DKE43_15510) | clpC | 2965550..2967985 (+) | 2436 | WP_034665649.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| DKE43_RS15455 (DKE43_15515) | radA | 2968079..2969458 (+) | 1380 | WP_034620767.1 | DNA repair protein RadA | Machinery gene |
| DKE43_RS15460 (DKE43_15520) | disA | 2969461..2970540 (+) | 1080 | WP_012008686.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| DKE43_RS15465 (DKE43_15525) | - | 2970694..2971794 (+) | 1101 | WP_003217214.1 | PIN/TRAM domain-containing protein | - |
| DKE43_RS15470 (DKE43_15530) | ispD | 2971808..2972497 (+) | 690 | WP_106073168.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| DKE43_RS15475 (DKE43_15535) | ispF | 2972501..2972977 (+) | 477 | WP_003216928.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 811 a.a. Molecular weight: 90039.79 Da Isoelectric Point: 6.2471
>NTDB_id=292691 DKE43_RS15450 WP_034665649.1 2965550..2967985(+) (clpC) [Bacillus pumilus strain ZB201701]
MMFGRFTERAQKVLALAQEEAIRLGHKNIGTEHILLGLVREGEGIAAKALEALGLVSDKIQKEVESLIGRGQEVSQAIPH
YTPRAKKVTELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGASAAGSNSNAN
TPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIHNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDQPSVDESIQILRGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREKVEVTKKSWKEKQGQENSEVSVDDIAMV
VSSWTGVPVSKIAQTETDKLLNMEQLLHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDEGQNYKDMKGKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
KEIVSLMSDQLTKRLKEQDLSIELTEAAKAKIADEGVDLEYGARPLRRAIQKHVEDRLSEELLKGNIEKGQHIVLDVEDG
EIVVKTTAATN
MMFGRFTERAQKVLALAQEEAIRLGHKNIGTEHILLGLVREGEGIAAKALEALGLVSDKIQKEVESLIGRGQEVSQAIPH
YTPRAKKVTELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGASAAGSNSNAN
TPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIHNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDQPSVDESIQILRGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREKVEVTKKSWKEKQGQENSEVSVDDIAMV
VSSWTGVPVSKIAQTETDKLLNMEQLLHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDEGQNYKDMKGKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
KEIVSLMSDQLTKRLKEQDLSIELTEAAKAKIADEGVDLEYGARPLRRAIQKHVEDRLSEELLKGNIEKGQHIVLDVEDG
EIVVKTTAATN
Nucleotide
Download Length: 2436 bp
>NTDB_id=292691 DKE43_RS15450 WP_034665649.1 2965550..2967985(+) (clpC) [Bacillus pumilus strain ZB201701]
ATGATGTTTGGAAGATTCACTGAAAGAGCTCAAAAGGTATTAGCACTTGCACAAGAAGAAGCCATTCGCCTAGGCCATAA
GAACATTGGTACTGAGCACATTTTACTTGGTCTAGTACGTGAGGGTGAGGGCATCGCCGCAAAAGCATTAGAAGCACTGG
GCCTTGTTTCAGATAAAATCCAAAAAGAAGTCGAAAGCTTGATTGGAAGAGGGCAAGAGGTGTCTCAAGCTATTCCTCAT
TATACGCCTAGAGCGAAGAAGGTCACTGAGCTTTCAATGGATGAAGCAAGAAAGCTAGGTCATTCCTATGTAGGGACAGA
ACATATTCTATTAGGTCTTATTCGCGAGGGAGAGGGTGTAGCTGCCCGCGTTTTAAATAACCTCGGAGTGAGCTTAAATA
AAGCACGTCAGCAAGTTCTGCAGCTGCTTGGCAGCAATGAAACAGGTGCATCTGCCGCTGGCTCTAACAGCAATGCAAAT
ACACCAACATTAGATAGCTTGGCAAGGGATTTAACAGCTATTGCGAAAGAAGACAGTTTGGACCCTGTCATTGGACGAAG
CAAAGAAATTCAGCGTGTCATTGAGGTCCTAAGCAGAAGAACAAAAAATAACCCTGTGCTGATTGGTGAGCCTGGTGTTG
GTAAAACAGCCATCGCTGAAGGTCTTGCGCAGCAAATTATTCATAATGAAGTGCCTGAAATCCTGCGCGATAAACGAGTG
ATGACACTTGATATGGGAACCGTTGTAGCGGGAACGAAATATCGTGGTGAATTTGAGGATCGTTTGAAAAAAGTCATGGA
CGAAATTCGTCAGGCAGGAAATATCATTCTCTTCATTGATGAGCTTCATACACTCATTGGTGCTGGTGGAGCAGAGGGTG
CGATTGACGCATCTAATATTCTCAAACCATCCTTAGCACGTGGAGAGCTTCAATGTATCGGGGCGACAACGTTAGATGAG
TACCGTAAATATATTGAAAAGGATGCTGCGCTTGAACGACGTTTCCAGCCAATTCAAGTGGATCAGCCATCTGTTGATGA
AAGTATTCAAATCTTAAGAGGACTTAGAGATCGTTATGAGGCACATCACCGTGTGTCCATTACGGATGAAGCGATTGAGG
CGGCGGTGAAGCTGTCTGACCGTTATATTTCTGATCGTTTCCTTCCAGATAAGGCGATTGATTTAATTGATGAGGCAGGT
TCGAAAGTCCGCTTACGTTCTTTCACAACACCGCCTAACCTAAAAGAACTAGAGCAAAAGCTCGATGAAGTACGCAAGGA
AAAGGATGCTGCTGTTCAAAGTCAGGAATTTGAAAAAGCAGCTTCTCTTCGCGATACGGAACAGCGTTTGCGTGAAAAAG
TAGAAGTCACAAAGAAATCTTGGAAAGAAAAGCAAGGACAGGAGAATTCAGAGGTATCAGTGGATGATATCGCAATGGTT
GTCTCTAGCTGGACGGGAGTGCCTGTTTCAAAAATTGCACAAACAGAAACAGATAAGCTTCTCAATATGGAACAATTGCT
CCATTCTCGTGTGATCGGGCAGGATGAAGCGGTTGTCGCTGTAGCAAAAGCTGTGAGACGTGCGCGTGCTGGCCTAAAAG
ATCCAAAACGTCCAATCGGCTCCTTTATCTTCTTAGGCCCAACAGGGGTTGGTAAAACGGAGCTTGCAAGAGCACTCGCA
GAGTCTATTTTCGGTGATGAAGAAGCGATGATCCGTATTGATATGTCTGAATACATGGAAAAACACTCTACATCTAGACT
TGTTGGGTCACCTCCAGGCTATGTTGGCTATGAAGAAGGCGGTCAACTGACTGAAAAAGTGAGAAGAAAACCTTATTCTG
TTGTGCTTTTAGACGAGATTGAAAAGGCACATCCAGATGTATTCAACATTTTGCTACAAGTGTTAGAAGATGGCCGTCTG
ACTGATTCTAAAGGGCGTACCGTTGACTTTAGAAATACGATTTTGATCATGACATCCAACGTTGGAGCTAGTGAATTGAA
GCGAAATAAATATGTTGGCTTTAATGTGCAGGATGAAGGACAAAATTACAAGGATATGAAAGGCAAAGTGATGGGCGAGT
TGAAGCGTGCATTTAGACCAGAATTCATCAACCGTATTGATGAAATCATTGTCTTCCATTCACTTGAAAAGAAACATCTA
AAAGAGATCGTGTCTCTCATGTCTGATCAATTGACGAAACGATTAAAAGAACAAGACCTTTCAATCGAATTGACGGAAGC
AGCAAAAGCGAAGATTGCCGACGAAGGTGTAGATCTTGAGTACGGTGCGCGCCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGATCGACTTTCGGAGGAGCTTCTGAAGGGTAATATTGAAAAAGGTCAACATATCGTATTAGATGTGGAAGATGGA
GAAATTGTCGTAAAAACGACGGCTGCTACGAACTAA
ATGATGTTTGGAAGATTCACTGAAAGAGCTCAAAAGGTATTAGCACTTGCACAAGAAGAAGCCATTCGCCTAGGCCATAA
GAACATTGGTACTGAGCACATTTTACTTGGTCTAGTACGTGAGGGTGAGGGCATCGCCGCAAAAGCATTAGAAGCACTGG
GCCTTGTTTCAGATAAAATCCAAAAAGAAGTCGAAAGCTTGATTGGAAGAGGGCAAGAGGTGTCTCAAGCTATTCCTCAT
TATACGCCTAGAGCGAAGAAGGTCACTGAGCTTTCAATGGATGAAGCAAGAAAGCTAGGTCATTCCTATGTAGGGACAGA
ACATATTCTATTAGGTCTTATTCGCGAGGGAGAGGGTGTAGCTGCCCGCGTTTTAAATAACCTCGGAGTGAGCTTAAATA
AAGCACGTCAGCAAGTTCTGCAGCTGCTTGGCAGCAATGAAACAGGTGCATCTGCCGCTGGCTCTAACAGCAATGCAAAT
ACACCAACATTAGATAGCTTGGCAAGGGATTTAACAGCTATTGCGAAAGAAGACAGTTTGGACCCTGTCATTGGACGAAG
CAAAGAAATTCAGCGTGTCATTGAGGTCCTAAGCAGAAGAACAAAAAATAACCCTGTGCTGATTGGTGAGCCTGGTGTTG
GTAAAACAGCCATCGCTGAAGGTCTTGCGCAGCAAATTATTCATAATGAAGTGCCTGAAATCCTGCGCGATAAACGAGTG
ATGACACTTGATATGGGAACCGTTGTAGCGGGAACGAAATATCGTGGTGAATTTGAGGATCGTTTGAAAAAAGTCATGGA
CGAAATTCGTCAGGCAGGAAATATCATTCTCTTCATTGATGAGCTTCATACACTCATTGGTGCTGGTGGAGCAGAGGGTG
CGATTGACGCATCTAATATTCTCAAACCATCCTTAGCACGTGGAGAGCTTCAATGTATCGGGGCGACAACGTTAGATGAG
TACCGTAAATATATTGAAAAGGATGCTGCGCTTGAACGACGTTTCCAGCCAATTCAAGTGGATCAGCCATCTGTTGATGA
AAGTATTCAAATCTTAAGAGGACTTAGAGATCGTTATGAGGCACATCACCGTGTGTCCATTACGGATGAAGCGATTGAGG
CGGCGGTGAAGCTGTCTGACCGTTATATTTCTGATCGTTTCCTTCCAGATAAGGCGATTGATTTAATTGATGAGGCAGGT
TCGAAAGTCCGCTTACGTTCTTTCACAACACCGCCTAACCTAAAAGAACTAGAGCAAAAGCTCGATGAAGTACGCAAGGA
AAAGGATGCTGCTGTTCAAAGTCAGGAATTTGAAAAAGCAGCTTCTCTTCGCGATACGGAACAGCGTTTGCGTGAAAAAG
TAGAAGTCACAAAGAAATCTTGGAAAGAAAAGCAAGGACAGGAGAATTCAGAGGTATCAGTGGATGATATCGCAATGGTT
GTCTCTAGCTGGACGGGAGTGCCTGTTTCAAAAATTGCACAAACAGAAACAGATAAGCTTCTCAATATGGAACAATTGCT
CCATTCTCGTGTGATCGGGCAGGATGAAGCGGTTGTCGCTGTAGCAAAAGCTGTGAGACGTGCGCGTGCTGGCCTAAAAG
ATCCAAAACGTCCAATCGGCTCCTTTATCTTCTTAGGCCCAACAGGGGTTGGTAAAACGGAGCTTGCAAGAGCACTCGCA
GAGTCTATTTTCGGTGATGAAGAAGCGATGATCCGTATTGATATGTCTGAATACATGGAAAAACACTCTACATCTAGACT
TGTTGGGTCACCTCCAGGCTATGTTGGCTATGAAGAAGGCGGTCAACTGACTGAAAAAGTGAGAAGAAAACCTTATTCTG
TTGTGCTTTTAGACGAGATTGAAAAGGCACATCCAGATGTATTCAACATTTTGCTACAAGTGTTAGAAGATGGCCGTCTG
ACTGATTCTAAAGGGCGTACCGTTGACTTTAGAAATACGATTTTGATCATGACATCCAACGTTGGAGCTAGTGAATTGAA
GCGAAATAAATATGTTGGCTTTAATGTGCAGGATGAAGGACAAAATTACAAGGATATGAAAGGCAAAGTGATGGGCGAGT
TGAAGCGTGCATTTAGACCAGAATTCATCAACCGTATTGATGAAATCATTGTCTTCCATTCACTTGAAAAGAAACATCTA
AAAGAGATCGTGTCTCTCATGTCTGATCAATTGACGAAACGATTAAAAGAACAAGACCTTTCAATCGAATTGACGGAAGC
AGCAAAAGCGAAGATTGCCGACGAAGGTGTAGATCTTGAGTACGGTGCGCGCCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGATCGACTTTCGGAGGAGCTTCTGAAGGGTAATATTGAAAAAGGTCAACATATCGTATTAGATGTGGAAGATGGA
GAAATTGTCGTAAAAACGACGGCTGCTACGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
96.054 |
100 |
0.961 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.259 |
99.877 |
0.492 |
| clpC | Streptococcus thermophilus LMD-9 |
46.247 |
100 |
0.471 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.884 |
100 |
0.467 |
| clpC | Streptococcus pneumoniae Rx1 |
45.802 |
99.877 |
0.457 |
| clpC | Streptococcus pneumoniae D39 |
45.802 |
99.877 |
0.457 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.802 |
99.877 |
0.457 |
| clpC | Streptococcus mutans UA159 |
43.675 |
100 |
0.451 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
49.369 |
87.916 |
0.434 |
| clpE | Streptococcus mutans UA159 |
53.478 |
79.778 |
0.427 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.713 |
79.531 |
0.419 |
| clpE | Streptococcus pneumoniae Rx1 |
52.713 |
79.531 |
0.419 |
| clpE | Streptococcus pneumoniae D39 |
52.713 |
79.531 |
0.419 |
| clpE | Streptococcus pneumoniae R6 |
52.713 |
79.531 |
0.419 |