Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | DKE43_RS15120 | Genome accession | NZ_CP029464 |
| Coordinates | 2905925..2906215 (-) | Length | 96 a.a. |
| NCBI ID | WP_087975202.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain ZB201701 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2900925..2911215
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DKE43_RS15080 (DKE43_15140) | - | 2900960..2901289 (+) | 330 | WP_024425625.1 | cyclic-di-AMP receptor | - |
| DKE43_RS15085 (DKE43_15145) | - | 2901302..2901742 (+) | 441 | WP_058015827.1 | DUF327 family protein | - |
| DKE43_RS15090 (DKE43_15150) | holB | 2901754..2902743 (+) | 990 | WP_034665677.1 | DNA polymerase III subunit delta' | - |
| DKE43_RS15095 (DKE43_15155) | - | 2902746..2903573 (+) | 828 | WP_012008643.1 | stage 0 sporulation family protein | - |
| DKE43_RS15100 (DKE43_15160) | yabA | 2903588..2903941 (+) | 354 | WP_003217957.1 | DNA replication initiation control protein YabA | - |
| DKE43_RS15105 (DKE43_15165) | - | 2903997..2904740 (+) | 744 | WP_060595347.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| DKE43_RS15110 (DKE43_15170) | - | 2904727..2905023 (+) | 297 | WP_060595348.1 | GIY-YIG nuclease family protein | - |
| DKE43_RS15115 (DKE43_15175) | rsmI | 2905001..2905879 (+) | 879 | WP_060595349.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| DKE43_RS15120 (DKE43_15180) | abrB | 2905925..2906215 (-) | 291 | WP_087975202.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Regulator |
| DKE43_RS15125 (DKE43_15185) | metG | 2906736..2908733 (+) | 1998 | WP_106037506.1 | methionine--tRNA ligase | - |
| DKE43_RS15130 (DKE43_15190) | - | 2908816..2909583 (+) | 768 | WP_034665688.1 | TatD family hydrolase | - |
| DKE43_RS15135 (DKE43_15195) | - | 2909828..2911030 (+) | 1203 | WP_127687314.1 | G5 and 3D domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10853.65 Da Isoelectric Point: 7.9655
>NTDB_id=292690 DKE43_RS15120 WP_087975202.1 2905925..2906215(-) (abrB) [Bacillus pumilus strain ZB201701]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK
Nucleotide
Download Length: 291 bp
>NTDB_id=292690 DKE43_RS15120 WP_087975202.1 2905925..2906215(-) (abrB) [Bacillus pumilus strain ZB201701]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
93.75 |
100 |
0.938 |